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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1312 fasta sequence
[CAACACCTTGATTGCTTTCGTGAGCTTATTCAATACAGACTGCAGATTTTTGATCGTAAATTTCTTCGACTTGTTACTCGCATATCGTGAAGTGAACATATGAGCAATCTTGAAACTAAGGCAGTAAACCTGTTCATTCATCTGTAAATTTCACCGACTGAGGTCATTGGGACATGTTCTATGGATGTCTAACTACCTCCTACTTCAACGAGCCATGCTTTCTAGTGTACGAAGTTGGAAAGCTAGGAAAGACAAACAAATCATTGGTAGTCGATCTAAGCCGTGTTAATAATCTCAGACTACCAGCTTGGAGTTTGCGTAATATCCGCCATCAGTGTTTGAAGACATTGGGAGGGACAGCTCATGATCATTCACAATGGTGCTCTTCATCTTTCTGTCGATCTTCAATTCCTTCATACATATATTTTCACTCCTTTTTTGAACCATTTAATTTTTAGTGTTTCATTAAAATTGCTACATTACTTTGGTCTCTCGCTATTCATCTTATTTTCATCTCATGCTATTGTAATTTGGCAACCTGAGCCAACACATGTGTGCCAGGCTCTATAGTGATGTTTGTATGCCAATGCAGTAGCAGAAAATTGTAGAGAACTGAACGTCTATTATTTTTTCTCCCAACACATGCAAACTTACTGGTGAGGTTTGTTGACTGACTCTTCAAAGGGCCGAGTACACTACCTTGCAGTTCTTTGTTTTACTCTGTATCTGGCTTCTATTTCACCTTCAAAGCTTTAAAGATTTATGTTGTAATCACTGTGAACAATGTTGAAATGAGACGCAGAGTACTAGAGAAAGATCATAAATCAACTGATAGGATTTCANATTNTCACCGAATGAGGCGGTTTGGAGACGTACTTTGCATTTTGAACAACCATTTATTTTTAAATGCAACGTTATCTGGCGTGGTTGCAAACAGGCTAGGGCCCCCAAATTATAACGGTGTGAGTACACGTGACCATAGACTGTTAGACTGAGCCATGTTACTAGGTCCAGGCTACCTGGTTGTGCAGCCGGTGATTAGTGGTTAGAAATGTTGGGTAACAGCTCAAAATTTACCCCAATTGTTTAGATAGACTCTCCTTTATCGTCCCCAGAATATCGAGCTTTAATATACCGATATTTAATTTTACCATAACCGCAACTATTGTTTCGACTTGTTAAACATTCATTTTGTGTAGTAAAGAGTATCGTGTCCCCTTACTTGTATAACTTAAGTGACTACGTTATGTACGGCGACTGTAATTCAAAATAAAGAAAACTTGTAATACTTACCGATACCAATACATTTTGT]
[-] EMBL CD063949 [CAACACCTTGATTGCTTTCGTGAGCTTATTCAATACAGACTGCAGATTTTTGATCGTAAATTTCTTCGACTTGTTACTCGCATATCGTGAAGTGAACATATGAGCAATCTTGAAACTAAGGCAGTAAACCTGTTCATTCATCTGTAAATTTCACCGACTGAGGTCATTGGGACATGTTCTATGGATGTCTAACTACCTCCTACTTCAACGAGCCATGCTTTCTAGTGTACGAAGTTGGAAAGCTAGGAAAGACAAACAAATCATTGGTAGTCG ]
[+] EMBL CD079958 [ CCTCCTACTTCAACGAGCCATGCTTTCTAGTGTACGAAGTTGGAAAGCTAGGAAAGACAAACAAATCATTGGTAGTCGATCTAAGCCGTGTTAATAATCTCAGACTACCAGCTTGGAGTTTGCGTAATATCCGCCATCAGTGTTTGAAGACATTGGGAGGGACAGCTCATGATCATTCACAATGGTGCTCTTCATCTTTCTGTCGATCTTCAATTCCTTCATACATATATTTTCACTCCTTTTTTGAACCATTTAATTTTTAGTGTTTCATTAAAATTGCTACATTACTTTGGTCTCTCGCTATTCATCTTATTTTCATCTCATGCTATTGTAATTTGGCAACCTGAGCCAACACATGTGTGCCAGGCTCTATAGTGATGTTTGTATGCCAATGCAGTAGCAGAAAATTGTAGAGAACTGAACGTCTATTATTTTTTCTCCCAACACATGCAAACTTACTGGTGAGGTTTGTTGACTGACTCTTCAAAGGGCCGAGTACACTACCTTGCAGTTCTTTGTTTTACTCTGTATCTGGCTTCTATTTCACCTTCAAAGCTTTAAAGATTTATGTTGTAATCACTGTGAACAATGTTGAAATGAGACGCAGAGTACTAGAGAAAGATCATAAATCAACTGATAGGATTTCANATTNTCACCGAAT ]
[-] EMBL CD074808 [ tcacCTTCAAAGATTTATGTTGTAATCACTGTGAACAATGTTGAAATGAGACGCAGAGTACTAGAGAAAGATCATAAATCAACTGATAGGATTTCAAATTTTCACCGAATGAGGCGGTTTGGAGACGTACTTTGCATTTTGAACAACCATTTATTTTTAAATGCAACGTTATCTGGCGTGGTTGCAAACAGGCTAGGGCCCCCAAATTATAACGGTGTGAGTACACGTGACCATAGACTGTTAGACTGAGCCATGTTACTAGGTCCAGGCTACCTGGTTGTGCAGCCGGTGATTAGTGGTTAGAAATGTTGGGTAACAGCTCAAAATTTACCCCAATTGTTTAGATAGACTCTCCTTTATCGTCCCCAGAATATCGAGCTTTAATATACCGATATTTAATTTTACCATAACCGCAACTATTGTTTCGACTTGTTAAACATTCATTTTGTGTAGTAAAGAGTATCGTGTCCCCTTACTTGTATAACTTAAGTGACTACGTTATGTACGGCGACTGTAATTCAAAATAAAGAAAACTTGTAATACTTACCGATACCAATACATTTTGT]
consensusID : consensus_6225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[AGGGCCATGCTTTCTAGTCTACGAAGTTGGAAAGCTAGGAAAGACAAACAAATCATTGGTAGTCGATCTAAGCCGTGTTAATAATCTCAGACTACCAGCTTGGAGTTTGCGTAATATGGGAGGGACAGCTCATGATCATTCACAATGGTGCTCTTCATCTTTCTGTCGATCTTCAATTCCTTCATACATATATTTTCACTCCTTTTTTGAACCATTTAATTTTTAGTGTTTCATTAAAACTATTCATCTTATTTTCATCTCATGCTATTGTAATTTGGCAACCTGAGCCAACACATGTGTGCCAGGCTCTATAGTGATGTTTGTATGCCAATGCAGTAGCAGAAAATTGTAGAGAACTGAACGCAAACTTACTGGTGAGGTTTGTTGACTGACTCTTCAAAGGGCCGAGTACACTACCTTGCAGTTCTTTGTTTTACTCTGTATCTGGCTTCTATTTCACCTTCAAAGATTTATGTTGTAATCACTGTGAACAATGTTGAAATGANNNNNNNNNNNNNN]
[+] EMBL CD080982 [AGGGCCATGCTTTCTAGTCTACGAAGTTGGAAAGCTAGGAAAGACAAACAAATCATTGGTAGTCGATCTAAGCCGTGTTAATAATCTCAGACTACCAGCTTGGAGTTTGCGTAATATGGGAGGGACAGCTCATGATCATTCACAATGGTGCTCTTCATCTTTCTGTCGATCTTCAATTCCTTCATACATATATTTTCACTCCTTTTTTGAACCATTTAATTTTTAGTGTTTCATTAAAACTATTCATCTTATTTTCATCTCATGCTATTGTAATTTGGCAACCTGAGCCAACACATGTGTGCCAGGCTCTATAGTGATGTTTGTATGCCAATGCAGTAGCAGAAAATTGTAGAGAACTGAACGCAAACTTACTGGTGAGGTTTGTTGACTGACTCTTCAAAGGGCCGAGTACACTACCTTGCAGTTCTTTGTTTTACTCTGTATCTGGCTTCTATTTCACCTTCAAAGATTTATGTTGTAATCACTGTGAACAATGTTGAAATGANNNNNNNNNNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6225#0 CAACACCTTGATTGCTTTCGTGAGCTTATTCAATACAGACTGCAGATTTTTGATCGTAAA 60
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 TTTCTTCGACTTGTTACTCGCATATCGTGAAGTGAACATATGAGCAATCTTGAAACTAAG 120
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 GCAGTAAACCTGTTCATTCATCTGTAAATTTCACCGACTGAGGTCATTGGGACATGTTCT 180
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 ATGGATGTCTAACTACCTCCTACTTCAACGAGCCATGCTTTCTAGTGTACGAAGTTGGAA 240
consensus_6225#1 ----------------------------AGGGCCATGCTTTCTAGTCTACGAAGTTGGAA 32
* *************** *************
consensus_6225#0 AGCTAGGAAAGACAAACAAATCATTGGTAGTCGATCTAAGCCGTGTTAATAATCTCAGAC 300
consensus_6225#1 AGCTAGGAAAGACAAACAAATCATTGGTAGTCGATCTAAGCCGTGTTAATAATCTCAGAC 92
************************************************************
consensus_6225#0 TACCAGCTTGGAGTTTGCGTAATATCCGCCATCAGTGTTTGAAGACATTGGGAGGGACAG 360
consensus_6225#1 TACCAGCTTGGAGTTTGCGTAATAT------------------------GGGAGGGACAG 128
************************* ***********
consensus_6225#0 CTCATGATCATTCACAATGGTGCTCTTCATCTTTCTGTCGATCTTCAATTCCTTCATACA 420
consensus_6225#1 CTCATGATCATTCACAATGGTGCTCTTCATCTTTCTGTCGATCTTCAATTCCTTCATACA 188
************************************************************
consensus_6225#0 TATATTTTCACTCCTTTTTTGAACCATTTAATTTTTAGTGTTTCATTAAAATTGCTACAT 480
consensus_6225#1 TATATTTTCACTCCTTTTTTGAACCATTTAATTTTTAGTGTTTCATTAAAA--------- 239
***************************************************
consensus_6225#0 TACTTTGGTCTCTCGCTATTCATCTTATTTTCATCTCATGCTATTGTAATTTGGCAACCT 540
consensus_6225#1 ---------------CTATTCATCTTATTTTCATCTCATGCTATTGTAATTTGGCAACCT 284
*********************************************
consensus_6225#0 GAGCCAACACATGTGTGCCAGGCTCTATAGTGATGTTTGTATGCCAATGCAGTAGCAGAA 600
consensus_6225#1 GAGCCAACACATGTGTGCCAGGCTCTATAGTGATGTTTGTATGCCAATGCAGTAGCAGAA 344
************************************************************
consensus_6225#0 AATTGTAGAGAACTGAACGTCTATTATTTTTTCTCCCAACACATGCAAACTTACTGGTGA 660
consensus_6225#1 AATTGTAGAGAACTGAACG--------------------------CAAACTTACTGGTGA 378
******************* ***************
consensus_6225#0 GGTTTGTTGACTGACTCTTCAAAGGGCCGAGTACACTACCTTGCAGTTCTTTGTTTTACT 720
consensus_6225#1 GGTTTGTTGACTGACTCTTCAAAGGGCCGAGTACACTACCTTGCAGTTCTTTGTTTTACT 438
************************************************************
consensus_6225#0 CTGTATCTGGCTTCTATTTCACCTTCAAAGCTTTAAAGATTTATGTTGTAATCACTGTGA 780
consensus_6225#1 CTGTATCTGGCTTCTATTTCACCTTCAAAG--------ATTTATGTTGTAATCACTGTGA 490
****************************** **********************
consensus_6225#0 ACAATGTTGAAATGAGACGCAGAGTACTAGAGAAAGATCATAAATCAACTGATAGGATTT 840
consensus_6225#1 ACAATGTTGAAATGANNNNNNNNNNNNNN------------------------------- 519
***************
consensus_6225#0 CANATTNTCACCGAATGAGGCGGTTTGGAGACGTACTTTGCATTTTGAACAACCATTTAT 900
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 TTTTAAATGCAACGTTATCTGGCGTGGTTGCAAACAGGCTAGGGCCCCCAAATTATAACG 960
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 GTGTGAGTACACGTGACCATAGACTGTTAGACTGAGCCATGTTACTAGGTCCAGGCTACC 1020
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 TGGTTGTGCAGCCGGTGATTAGTGGTTAGAAATGTTGGGTAACAGCTCAAAATTTACCCC 1080
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 AATTGTTTAGATAGACTCTCCTTTATCGTCCCCAGAATATCGAGCTTTAATATACCGATA 1140
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 TTTAATTTTACCATAACCGCAACTATTGTTTCGACTTGTTAAACATTCATTTTGTGTAGT 1200
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 AAAGAGTATCGTGTCCCCTTACTTGTATAACTTAAGTGACTACGTTATGTACGGCGACTG 1260
consensus_6225#1 ------------------------------------------------------------
consensus_6225#0 TAATTCAAAATAAAGAAAACTTGTAATACTTACCGATACCAATACATTTTGT 1312
consensus_6225#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||