cluster # 6262

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Schistosoma mansoni
cluster # 6262 cluster # 6262 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6262#0 length = 373 sequences # 2

consensus_6262#1 length = 177 sequences # 1
consensus_6262#2 length = 172 sequences # 1

consensusID : consensus_6262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 373
fasta sequence

                              [GCCAATTTTTCAAAAAATATTCGAAGGGACTTATTTACTGTGCCGGAAC-TGCACTATGTGTTTTAAGGTCATTTGTCCTAAGTGTGGAAAGACTACATGGAGTGGATGTGGAAATCATATAGAACAAGTTTTGAAAGATATACGCCCAGAAGAGCGATGTCAATGCCCACGTTCTTAAGTAACTCACATGTTTCTACATTGTACAACAATTCAGATAGTTGAGGTGTATTTTTAGTTTCACACTACTTACAAGCTAGCTTATTTCTCTTATTGATAACCTGTTTATTTTTGGTTTTAATTTGTAGAGCTCAATACTTTTGCTTGTTGTATTATACTACTGTGGCTTTAAGTTTATTATAATACAAGTCCCGAC]

[+] EMBL CD141955             [GCCAATTTTTCAAAAAATATTCGAAGGGACTTATTTACTGTGCCGGAAC TGCACTATGTGTTTTAAGGTCATTTGTCCTAAGTGTGGAAAGACTACATGGAGTGGATGTGGAAATCATATAGAACAAGTTTTGA                                                                                                                                                                                                                                               ]
[+] EMBL CD196356             [                                        cgtCGGGACTTGCACTATGTGTTTTAAGGTCATTTGTCCTAAGTGTGGAAAGACTACATGGAGTGGATGTGGAAATCATATAGAACAAGTTTTGAAAGATATACGCCCAGAAGAGCGATGTCAATGCCCACGTTCTTAAGTAACTCACATGTTTCTACATTGTACAACAATTCAGATAGTTGAGGTGTATTTTTAGTTTCACACTACTTACAAGCTAGCTTATTTCTCTTATTGATAACCTGTTTATTTTTGGTTTTAATTTGTAGAGCTCAATACTTTTGCTTGTTGTATTATACTACTGTGGCTTTAAGTTTATTATAATACAAGTCCCGAC]




>consensus_6262#0
GCCAATTTTTCAAAAAATATTCGAAGGGACTTATTTACTGTGCCGGAACTGCACTATGTG
TTTTAAGGTCATTTGTCCTAAGTGTGGAAAGACTACATGGAGTGGATGTGGAAATCATAT
AGAACAAGTTTTGAAAGATATACGCCCAGAAGAGCGATGTCAATGCCCACGTTCTTAAGT
AACTCACATGTTTCTACATTGTACAACAATTCAGATAGTTGAGGTGTATTTTTAGTTTCA
CACTACTTACAAGCTAGCTTATTTCTCTTATTGATAACCTGTTTATTTTTGGTTTTAATT
TGTAGAGCTCAATACTTTTGCTTGTTGTATTATACTACTGTGGCTTTAAGTTTATTATAA
TACAAGTCCCGAC

consensusID : consensus_6262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [AAGTGTGGAAAGACTACTGGAGTGGATGTGGAAATCATATAGAACAAGTTTTGAAAGATATCGCCCAGAAGACGATGTCAATGCCACGTTCTTAAGTAACTCACATGTTTCTACATTGTACAACATCAGATAGTTGAGGTGTATTTAGTTCACACTACTCAGCGCTATTCCTATGAT]

[+] EMBL SMAA14118            [AAGTGTGGAAAGACTACTGGAGTGGATGTGGAAATCATATAGAACAAGTTTTGAAAGATATCGCCCAGAAGACGATGTCAATGCCACGTTCTTAAGTAACTCACATGTTTCTACATTGTACAACATCAGATAGTTGAGGTGTATTTAGTTCACACTACTCAGCGCTATTCCTATGAT]




>consensus_6262#1
AAGTGTGGAAAGACTACTGGAGTGGATGTGGAAATCATATAGAACAAGTTTTGAAAGATA
TCGCCCAGAAGACGATGTCAATGCCACGTTCTTAAGTAACTCACATGTTTCTACATTGTA
CAACATCAGATAGTTGAGGTGTATTTAGTTCACACTACTCAGCGCTATTCCTATGAT

consensusID : consensus_6262#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [TCCCAGAAGAGCGATGTCAATGCCCACTTTCTTAAGTAACTCACATGTTTCTACATTGTACAACAATCAGATAGTTGAGGTGTATGTTTAGTTTCACACTACTTACAAGTCTAGCTTATGTCTCTATTGATAACTGTTTATTTTGTTTATTGTAGAGCTCATCTTGCTTGTT]

[+] EMBL SMAA14121            [TCCCAGAAGAGCGATGTCAATGCCCACTTTCTTAAGTAACTCACATGTTTCTACATTGTACAACAATCAGATAGTTGAGGTGTATGTTTAGTTTCACACTACTTACAAGTCTAGCTTATGTCTCTATTGATAACTGTTTATTTTGTTTATTGTAGAGCTCATCTTGCTTGTT]




>consensus_6262#2
TCCCAGAAGAGCGATGTCAATGCCCACTTTCTTAAGTAACTCACATGTTTCTACATTGTA
CAACAATCAGATAGTTGAGGTGTATGTTTAGTTTCACACTACTTACAAGTCTAGCTTATG
TCTCTATTGATAACTGTTTATTTTGTTTATTGTAGAGCTCATCTTGCTTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6262#0      GCCAATTTTTCAAAAAATATTCGAAGGGACTTATTTACTGTGCCGGAACTGCACTATGTG 60
consensus_6262#2      ------------------------------------------------------------
consensus_6262#1      ------------------------------------------------------------
                                                                                  

consensus_6262#0      TTTTAAGGTCATTTGTCCTAAGTGTGGAAAGACTACATGGAGTGGATGTGGAAATCATAT 120
consensus_6262#2      ------------------------------------------------------------
consensus_6262#1      ---------------------AAGTGTGGAAAGACTACTGGAGTGGATGTGGAAATCATA 39
                                                                                  

consensus_6262#0      AGAACAAGTTTTGAAAGATATACGCCCAGAAGAGCGATGTCAATGCCCACGTTCTTAAGT 180
consensus_6262#2      -----------------------TCCCAGAAGAGCGATGTCAATGCCCACTTTCTTAAGT 37
consensus_6262#1      TAGAACAAGTTTTGAAAGATATCGCCCAGAAGA-CGATGTCAATGCC-ACGTTCTTAAGT 97
                                              ********* ************* ** *********

consensus_6262#0      AACTCACATGTTTCTACATTGTACAACAATTCAGATAGTTGAGGTGTATTTTTAGTTTCA 240
consensus_6262#2      AACTCACATGTTTCTACATTGTACAACAAT-CAGATAGTTGAGGTGTATGTTTAGTTTCA 96
consensus_6262#1      AACTCACATGTTTCTACATTGTACAACAT--CAGATAGTTGAGGTGTA--TTTAGTT-CA 152
                      ****************************   *****************  ******* **

consensus_6262#0      CACTACTTACAAG-CTAGCTTATTTCTCTTATTGATAACCTGTTTATTTTTGGTTTTAAT 299
consensus_6262#2      CACTACTTACAAGTCTAGCTTATGTCTCT-ATTGATAAC-TGTTTATTTTG---TTTA-- 149
consensus_6262#1      CACTACTCA-GCGCTATTCCTATGAT---------------------------------- 177
                      ******* *   *     * ***                                     

consensus_6262#0      TTGTAGAGCTCAATACTTTTGCTTGTTGTATTATACTACTGTGGCTTTAAGTTTATTATA 359
consensus_6262#2      TTGTAGAGCTCA----TCTTGCTTGTT--------------------------------- 172
consensus_6262#1      ------------------------------------------------------------
                                                                                  

consensus_6262#0      ATACAAGTCCCGAC 373
consensus_6262#2      --------------
consensus_6262#1      --------------