These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTAAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACCGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTTCATAATTTCTTACTAGAAGAAAAAAGAAGCGATGGTAATGAGTCAGGAAAATTGAAAAGAAATGGAAGTCTTTGATCTCTTCTAATTTATTAATGACACCATGCCAGTTTTAAACTGGTATGAATGATGGTGTTGAATGAATTTTCACCAATTAAACCTGACCGCGCTTTTCTCTTACAACCTTGAACGTCTCGGAGAACG] [+] EMBL CD185880 [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTAAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACCGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTTCATAATTTCTTACTAGAAGAAAAAAGAAGCGATGGTAATGAGTCAGGAAAATTGAAAAGAAATGGAAGTCTTTGATCTCTTCTAATTTATTAATGACACCATGCCAGTTTTAAACTGGTATGAATGATGGTGTTGAATGAATTTTCACCAATTAAACCTGACCGCGCTTTTCTCTTACAACCTTGAACGTCTCGGAGAACG] consensusID : consensus_6263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 281 fasta sequence [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGACTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACCTGACCGCGCTTT] [+] EMBL CD141989 [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGACTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACCTGACCGCGCTT ] [-] EMBL CD197991 [ CAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACCTGACCGCGCTTT] consensusID : consensus_6263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [CAAATAAGTAGTTATTCTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACGGGCCAACAGTTT] [-] EMBL CD197985 [CAAATAAGTAGTTATTCTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACGGGCCAACAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6263#1 ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGACTTTTTATTTGA 60 consensus_6263#2 -CAAATAAGTAGTTATTCTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGA 59 consensus_6263#0 ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGA 60 **************** ****************************** *********** consensus_6263#1 TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC 120 consensus_6263#2 TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC 119 consensus_6263#0 TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC 120 ************************************************************ consensus_6263#1 TATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAA 180 consensus_6263#2 TATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAA 179 consensus_6263#0 TATTA-AAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAA 179 ***** ****************************************************** consensus_6263#1 TATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGA 240 consensus_6263#2 TATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGA 239 consensus_6263#0 TATATCAGTAAATGCTGGTAGGACCGATGAAGCACGTTGAACTAATTCAGTAGCAACTGA 239 ************************ *********************************** consensus_6263#1 TCTTTTCTTTTT-CATAATTTCTTAAAACCTGACCGCGCTTT------------------ 281 consensus_6263#2 TCTTTTCTTTTT-CATAATTTCTTAAAACGGGCCAACAGTTT------------------ 280 consensus_6263#0 TCTTTTCTTTTTTCATAATTTCTTACTAGAAGAAAAAAGAAGCGATGGTAATGAGTCAGG 299 ************ ************ * * consensus_6263#1 ------------------------------------------------------------ consensus_6263#2 ------------------------------------------------------------ consensus_6263#0 AAAATTGAAAAGAAATGGAAGTCTTTGATCTCTTCTAATTTATTAATGACACCATGCCAG 359 consensus_6263#1 ------------------------------------------------------------ consensus_6263#2 ------------------------------------------------------------ consensus_6263#0 TTTTAAACTGGTATGAATGATGGTGTTGAATGAATTTTCACCAATTAAACCTGACCGCGC 419 consensus_6263#1 ---------------------------------- consensus_6263#2 ---------------------------------- consensus_6263#0 TTTTCTCTTACAACCTTGAACGTCTCGGAGAACG 453 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||