cluster # 6274

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Schistosoma mansoni
cluster # 6274 cluster # 6274 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6274#0 length = 466 sequences # 3

consensus_6274#1 length = 462 sequences # 1

consensusID : consensus_6274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 466
fasta sequence

                              [AAATGTCACCAATATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACTGATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAAACTTCTCCATCATATAATTATTTGTGATAATAGTTCGACAATAAGGATAAGCATTCCACGCATACTCGTTAAAAACGAATGCACTTTCAGGGGCGATAACACGAAGAAACCCTGGTACCTTTTGCGCAAGATGATAATATTTGTGGGTGTATTGTCCAGTAGTGAATCTTGGGTCTCCTTTTAATAAGGGGCGATCAGGTTTATACGTTGTTTGATCGAACGGCTCGTTGACCAATATTTGCA-CGCCATCACCACCACC-TGTCTCTCCTTTGGAAGTTTCAGCAACGGAATACAGTTGACCAACTTGATATTCTTC-AACTGTCATAAGGTAAAATACCCCATACTC]

[+] EMBL CD162265             [AAATGTCACCAATATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACTGATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAAACTTCTCCATCATATAATTATTTGTGATAATAGTTCGACAATAAGGATAAGCATTCCACGCATACTCGTTAAAAACGAATGCACTTTCAGGGGCGATAACACGAAGAAACCCTGGTACCTTTTGCGCAAGATGATAATATTTGTGGGTGTATTGTCCAGTAGTGAATCTTGGGTCTCCTTTTAATAAGGGGCGATCAGGTTTATACGTTGTTTGATCGAACGGCTCGTTGACCAATATTTGCA CGCCATCACCACCACC TGTCTCTCCTTTGGAAGTTTCAGCAACGGGATACAGTTGAACCACTTGATATTCTTC AACTGTCGTAAGGAAAAATACCACAAACTC]
[+] EMBL CD162263             [AAATGTCACCAAGGTCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACTGATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAAACTTCTCCATCATATAATTATTTGTGATAATAGTTCGACAATAAGGATAAGCATTCCACGCATACTCGCTAAAAACGAATGCCCTTTCAGGGGCGATAACACGAAGAAACCCTGGTACCTTTTGCGCAAGATGATAATATTCGTGGGTGGATTGTCCAGTAGTGAATCTTGGGTCTCCTTTT ATAAGGGGCGATCAGGTTTATACGTTGTTTGATCGAACCGCTCGTTGACCCATATTTGCACCCCCAT ACCACCACCTTGT TTTTCTTTGGAAGGTTCAACCACCGAATCCAGGTGACCAACTTGATATTCTTCAAACTGCCATACGGTAAAATACCCCATA   ]
[-] EMBL CD162258             [                                                                                                                                                                                                                                      CCTGGTACCTTTTGCGCAAGATGATAATATTTGTGGGTGTATTGTCCAGTAGTGAATCTTGGGTCTCCTTTTAATAAGGGGCGATCAGGTTTATACGTTGTTTGATCGAACGGCTCGTTGACCAATATTTGCA CGCCATCACCACCACC TGTCTCTCCTTTGGAAGTTTCAGCAACGGAATACAGTTGACCAACTTGATATTCTTC AACTGTCAT AGGTAAATTACACGATA   ]




>consensus_6274#0
AAATGTCACCAATATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACT
GATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAA
ACTTCTCCATCATATAATTATTTGTGATAATAGTTCGACAATAAGGATAAGCATTCCACG
CATACTCGTTAAAAACGAATGCACTTTCAGGGGCGATAACACGAAGAAACCCTGGTACCT
TTTGCGCAAGATGATAATATTTGTGGGTGTATTGTCCAGTAGTGAATCTTGGGTCTCCTT
TTAATAAGGGGCGATCAGGTTTATACGTTGTTTGATCGAACGGCTCGTTGACCAATATTT
GCACGCCATCACCACCACCTGTCTCTCCTTTGGAAGTTTCAGCAACGGAATACAGTTGAC
CAACTTGATATTCTTCAACTGTCATAAGGTAAAATACCCCATACTC

consensusID : consensus_6274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [AAATGTCACCAAGATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACTGATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAGGCTTCTTCATCATATAATTATTCGCGATAATAGTACGACGATAATGATAAGCATTTCACGCTTACTCTGTAAAAACGAATGCACTTTCAGGGCCAATAACACGAAAAAACCTTGGTCCCTTTGGCGCACGATGATAATATTTGTGGCTGTATGGCCACAGAGGGAATCTTGGGTCTCCTTTTATTACGGGGCAGACAGGTTAATACTTTGTTTGATCGACCGGTTCGTGGACCAATATCGGCACGCCATCACCACCACCTGTATATCCTATAGAATTTGAGCACCGGAATACAGTAGACCAACTTGATTTTCTTCAACTGCCATAGGTAAACATACCACCAC]

[+] EMBL CD162267             [AAATGTCACCAAGATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACTGATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAGGCTTCTTCATCATATAATTATTCGCGATAATAGTACGACGATAATGATAAGCATTTCACGCTTACTCTGTAAAAACGAATGCACTTTCAGGGCCAATAACACGAAAAAACCTTGGTCCCTTTGGCGCACGATGATAATATTTGTGGCTGTATGGCCACAGAGGGAATCTTGGGTCTCCTTTTATTACGGGGCAGACAGGTTAATACTTTGTTTGATCGACCGGTTCGTGGACCAATATCGGCACGCCATCACCACCACCTGTATATCCTATAGAATTTGAGCACCGGAATACAGTAGACCAACTTGATTTTCTTCAACTGCCATAGGTAAACATACCACCAC]




>consensus_6274#1
AAATGTCACCAAGATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACT
GATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAG
GCTTCTTCATCATATAATTATTCGCGATAATAGTACGACGATAATGATAAGCATTTCACG
CTTACTCTGTAAAAACGAATGCACTTTCAGGGCCAATAACACGAAAAAACCTTGGTCCCT
TTGGCGCACGATGATAATATTTGTGGCTGTATGGCCACAGAGGGAATCTTGGGTCTCCTT
TTATTACGGGGCAGACAGGTTAATACTTTGTTTGATCGACCGGTTCGTGGACCAATATCG
GCACGCCATCACCACCACCTGTATATCCTATAGAATTTGAGCACCGGAATACAGTAGACC
AACTTGATTTTCTTCAACTGCCATAGGTAAACATACCACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6274#0      AAATGTCACCAATATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACT 60
consensus_6274#1      AAATGTCACCAAGATCTATGTAGATCACTTCAACTTCCGCCCATTTTTCTGGACTTAACT 60
                      ************ ***********************************************

consensus_6274#0      GATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAA 120
consensus_6274#1      GATGAGCATTTTCAACATTTATTAAGGAGTCCATGTGAAGAGATTCAATGGTTACACTAG 120
                      *********************************************************** 

consensus_6274#0      ACTTCTCCATCATATAATTATTTGTGATAATAGTTCGACAATAAGGATAAGCATTCCACG 180
consensus_6274#1      GCTTCTTCATCATATAATTATTCGCGATAATAGTACGACGATAATGATAAGCATTTCACG 180
                       ***** *************** * ********* **** **** ********** ****

consensus_6274#0      CATACTCGTTAAAAACGAATGCACTTTCAGGGGCGATAACACGAAGAAACCCTGGTACCT 240
consensus_6274#1      CTTACTCTGTAAAAACGAATGCACTTTCAGGGCCAATAACACGAAAAAACCTTGGTCCCT 240
                      * *****  *********************** * ********** ***** **** ***

consensus_6274#0      TTTGCGCAAGATGATAATATTTGTGGGTGTATTGTCCAGTAGTGAATCTTGGGTCTCCTT 300
consensus_6274#1      TTGGCGCACGATGATAATATTTGTGGCTGTATGGCCACAGAGGGAATCTTGGGTCTCCTT 300
                      ** ***** ***************** ***** * *    ** *****************

consensus_6274#0      TTAATAAGGGGCGATCAGGTTTATACGTTGTTTGATCGAACGGCTCGTTGACCAATATTT 360
consensus_6274#1      TTATTACGGGGCAGACAGGTTAATACTTTGTTTGATCGACCGGTTCGTGGACCAATATCG 360
                      *** ** *****   ****** **** ************ *** **** *********  

consensus_6274#0      GCACGCCATCACCACCACCTGTCTCTCCTTTGGAAGTTTCAGCAACGGAATACAGTTGAC 420
consensus_6274#1      GCACGCCATCACCACCACCTGTATATCCTATAGAA-TTTGAGCACCGGAATACAGTAGAC 419
                      ********************** * **** * *** *** **** *********** ***

consensus_6274#0      CAACTTGATATTCTTCAACTGTCATAAGGTAAAATACC-CCATACTC 466
consensus_6274#1      CAACTTGATTTTCTTCAACTGCCATAGGTAAACATACCACCAC---- 462
                      ********* *********** **** *  ** ***** ***