These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 668 fasta sequence [GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACACAAGAAAAGAATTAGGATCCTTATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTACAGTACATCACGTGCATAAATTTGAAAATATTACATTTATTTGGATTGACCCCTGTGATTTACAATCATGTGGAATTATAGTGAAACAAACATTAATTGGGGATAATGTTCATCAATTTTATGGTTATAAACTTTATCAAAATACTCAGAAATTGATTGGCGTGTTAAAGCACATCTACTCAAATCTTGAGTTAATACCACCTAATGAAGACATATTAAGCANATCAGAAAATTCTACGGATACCAAGATTTTCG] [+] EMBL AI067258 [GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACACAAGAAAAGAATTAGGATCCTTATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTACAGTACATCACGTGCATAAATTTGAAAATATTACATTTATTTGGATTGACCCCTGTGATTTACAATCATGTGGAATTATAGTGAAACAAACATTAATTGGGGATAATGTTCATCAATTTTATGGTTATAAACTTTATCAAAATACTCAGAAATTGATTGGCGTGTTAAAGCACATCTACTCAAATCTTGAGTTAATACCACCTAATGAAGACATATTAAGCANATCAGAAAATTCTACGGATACCAAGATTTTCG] [+] EMBL AI067777 [GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACACAAGAAAAGAATTAGGATCCTTATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTACAGTACATCACGTGCATAAATTTGAAAATATTACATTTA ] [+] EMBL AI067127 [ ATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACA ] consensusID : consensus_6277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TTTCATTATCTTTAAGTTTTTTAGACACTAAGTTTATGATAATAGAATTTGTTACCATCATCATCCTATCACTACAGGTACATAACCAAGTTTGAAGCGGAAAACTTTTATCGTTTGGTGAGAACTGATCATTGACGGGAATGTTTATGTGCTGTGTAGTGTGCATTTCTTCGACCAAACTTTCAACACGAACGAAGATACTACACTGAACATATTCCTCTAATATATTAAAACTTCGTATTTTTTTATTGTTGCCCATTTTATTTACATTTTGCTCATTACTCTAAATTGTGTCACATACAATTACTTAGGACATATTAAGCAAATCAGAAAATTCTACGGATACCAAGATTTTCGACACTACTGAGGAAAATAATCCTGATCTGATTCAGCTAATAGATATTAGCGACAACACTGTTTCATCTAACCAAAATAGCACTGACAATGGAAACATTCAAAAACAATACACAAGTAATGGACACAACGTTCCGTGCAGTAAAGATGGTGAAAAAAACTGGATAACTTTCGATGATCATTTCGAATACCAAGGGACTAACTGGGCAAACTCTACACCTACAAATTTAATGTCTCANAATCTTCC] [+] EMBL CD124692 [TTTCATTATCTTTAAGTTTTTTAGACACTAAGTTTATGATAATAGAATTTGTTACCATCATCATCCTATCACTACAGGTACATAACCAAGTTTGAAGCGGAAAACTTTTATCGTTTGGTGAGAACTGATCATTGACGGGAATGTTTATGTGCTGTGTAGTGTGCATTTCTTCGACCAAACTTTCAACACGAACGAAGATACTACACTGAACATATTCCTCTAATATATTAAAACTTCGTATTTTTTTATTGTTGCCCATTTTATTTACATTTTGCTCATTACTCTAAATTGTGTCACATACAATTACTTAGGACATATTAAGCAAATCAGAAAATTCTACGGATACCAAGATTTTCGACACTACTGAGGAAAATAATCCTGATCTGATTCAGCTAATAGATATTAGCGACAACACTGTTTCATCTAACCAAAATAGCACTGACAATGGAAACATTCAAAAACAATACACAAGTAATGGACACAACGTTCCGTGCAGTAAAGATGGTGAAAAAAACTGGATAACTTTCGATGATCATTTCGAATACCAAGGGACTAACTGGGCAAACTCTACACCTACAAATTTAATGTCTCANAATCTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6277#0 GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTT--GTAACTGACTGCAAAATA 58 consensus_6277#1 ----TTTCATTATCTTTAAGTTTTTTAGACACTAAGTTTATGATAATAGAATTTGTTAC- 55 ** * ** * * * * *** ** ** *** ** * * consensus_6277#0 TATCGT-ATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCA 117 consensus_6277#1 CATCATCATCCTATCACTACAGGTA-CATAACCAAGTTTGAAGCGGAAAACTTTTATCGT 114 *** * *** *** ** *** * **** * * ** * ** * * * consensus_6277#0 AGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATC 177 consensus_6277#1 TTGGTGAGAACTGATCATTGACGGGAATGTTTATGTGCTGTG---TAGTGTGCATTTCTT 171 *** ** * * ** * *** * *** * ** * consensus_6277#0 TGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAAT 237 consensus_6277#1 CGACCAAACTTTCAACA---CGAACGAAGATACTACACTGAACATATT----CCTCTAAT 224 ** * *** * ** * ** * ** ** * * *** ** * *** consensus_6277#0 ATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTG 297 consensus_6277#1 ATATT------AAAACTTCG----TATTTTTTTATTGTTGCCC-------ATTTTATTTA 267 *** ** ***** ** * * * *** ********* consensus_6277#0 CGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATT--ACACAAGAAA 355 consensus_6277#1 C---ATTTTGCTC--ATTACTCTAAATTGTGTCACATACAATTACTTAGGACATATTAAG 322 * * * *** ****** *** * ** * **** * * *** * ** consensus_6277#0 AGAATTAGGATCCT-TATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTAC 414 consensus_6277#1 CAAATCAGAAAATTCTACGGATACCAAGATTTTCGACACTACTGAGGAAAATAATCCTGA 382 *** ** * * ** ** **** * ** * * *** ** consensus_6277#0 AGTACATCACGTGCATAAATTTGAAAATATTACATTTATTTGGATTGACCCCTGTGATTT 474 consensus_6277#1 TCTGATTCAGCTA-ATAGATATTAGCG-ACAACACT-GTTTCATCTAACCAAAATAGC-- 437 * *** * *** ** * * * *** * *** * *** * consensus_6277#0 ACAATCATGTGGAATTATAGTGAAACAAACATTAATTGGGGATAATGTTCATCAATTTTA 534 consensus_6277#1 ACTGACA-ATGGAAACATTCAAAAACAATACACAA------GTAATGGACACAACGTTCC 490 ** ** ***** ** ****** ** ***** ** * ** consensus_6277#0 TGGTTATAAACTTTATCAAAATACTCAGAAATTGATTGGCGTGTTAAAGCACATCTACTC 594 consensus_6277#1 GTGCAGTAAAGATGGTGAAAAAAACTGGATAACTTTCGATG-ATCATTTCGAA--TACCA 547 * **** * * **** * ** * * * * * * * * *** consensus_6277#0 AAATCTTGAGTTAATACCACCTAATGAAGACATATTAAGCANATCAGAAAATTCTACGGA 654 consensus_6277#1 AGGGACTAACTGGGCAA-ACTCTACACCTACAAATTTAATGTCTCANAATCTTCC----- 601 * * * * * ** * *** *** * *** ** *** consensus_6277#0 TACCAAGATTTTCG 668 consensus_6277#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||