These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [TATTTCTGTGATTAGTACAGAATTTCACCAATCAAAAAGGGTTAATTCTTACGTAACTTGTTACAATAATTAATCGATTATGTAATTTTATTTTGATTTTAATTTAGAAGCTATTGAGTTATGTTTTAACATTACAATGATGTACTTGATGATTCTCATTTTTATTTGCAATTCAATGATTCTTCAACCTTCAATTTGCACTTTTATTCTTATTTTTACTTCACATAGAAACATATAAACACTCCAATATCATTCATTAATAACTCATCTTAAACATACATACACATACACACACACAATTAATCCAGTCTCCTTTTATTTCACATCGTTGAACTTTTCACTTGATTCTCATTCAACTGACTTATATTATCCTGTTTACATTAATTCAACATCCAAATATGATTAGTTTTACGTAGTATAGTTTTTGATATGATTGTTAAAAAACACTATATATTTCTTTGATGATTTGATTTTGATTATTATCCTGAAGAAGTCCAGACAAGTTAGCTGGACGAAACGTTGGAATTATTTAAATTTCAATCGCTGAGATTATTTAAATATGATTTTTCACATATAATGACTTCTCTATACT] [+] EMBL BF936832 [TATTTCTGTGATTAGTACAGAATTTCACCAATCAAAAAGGGTTAATTCTTACGTAACTTGTTACAATAATTAATCGATTATGTAATTTTATTTTGATTTTAATTTAGAAGCTATTGAGTTATGTTTTAACATTACAATGATGTACTTGATGATTCTCATTTTTATTTGCAATTCAATGATTCTTCAACCTTCAATTTGCACTTTTATTCTTATTTTTACTTCACATAGAAACATATAAACACTCCAATATCATTCATTAATAACTCATCTTAAACATACATACACATACACACACACAATTAATCCAGTCTCCTTTTATTTCACATCGTTGAACTTTTCACTTGATTCTCATTCAACTGACTTATATTATCCTGTTTACATTAATTCAACATCCAAATATGATTAGTTTTACGTAGTATAGTTTTTGATATGATTGTTAAAAAACACTATATATTTCTTTGATGATTTGATTTTGATTATTATCCTGAAGAAGTCCAGACAAGTTAGCTGGACGAAACGTTGGAATTATTTAAATTTCAATCGCTGAGATTATTTAAATATGATTTTTCACATATAATGACTTCTCTATACT] consensusID : consensus_6350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TATTCCCTGATTAATTGCAACTGTCACAACTAATAAGACATGACAACAAACTCAAACTTTCTTTCCAGTTGTCATGCTTTNCTCTCGCTTTCTATTTGAATTCGTCGCACAAGCAACACCATTTAAGTGATTNGCTGACCGATCGAATNTNCTGCAATNCGTCNATGAGCGCATACCACTAACAAGACCATTTGCNCTGAACAGTNTTTGCACTCAACTGATGTCATCTTCGCAAGCAGTAACAATATGAGTTCCAGAATATAATTTATAATTGGTCTTCACACTAGCCTATGATGGNGGACTTCCTTCATCCACCACATCTAAACAGGAAATTTTAGTTGTNAGAGTCTCCNGTCTCCTTTAATTCACATCGTTGAACTTTTCACTTGATCCTCATTCAACTGACTCATNTTATCCTGTTTACAAAAATTCGACATCCAAATNTGATTGGGATTAAAGTAGTAGAGTTTTTGATATGATTGTTAAAAAACACTATATNTTTCTTTGANGANTTTGATTTGGATTATTTCCCTGAAAGAAGTCAGAAAATTGCTGGGACAAACTTGGGAATTATTTAAATTCAATCGCTG] [+] EMBL AI110913 [TATTCCCTGATTAATTGCAACTGTCACAACTAATAAGACATGACAACAAACTCAAACTTTCTTTCCAGTTGTCATGCTTTNCTCTCGCTTTCTATTTGAATTCGTCGCACAAGCAACACCATTTAAGTGATTNGCTGACCGATCGAATNTNCTGCAATNCGTCNATGAGCGCATACCACTAACAAGACCATTTGCNCTGAACAGTNTTTGCACTCAACTGATGTCATCTTCGCAAGCAGTAACAATATGAGTTCCAGAATATAATTTATAATTGGTCTTCACACTAGCCTATGATGGNGGACTTCCTTCATCCACCACATCTAAACAGGAAATTTTAGTTGTNAGAGTCTCCNGTCTCCTTTAATTCACATCGTTGAACTTTTCACTTGATCCTCATTCAACTGACTCATNTTATCCTGTTTACAAAAATTCGACATCCAAATNTGATTGGGATTAAAGTAGTAGAGTTTTTGATATGATTGTTAAAAAACACTATATNTTTCTTTGANGANTTTGATTTGGATTATTTCCCTGAAAGAAGTCAGAAAATTGCTGGGACAAACTTGGGAATTATTTAAATTCAATCGCTG] consensusID : consensus_6350#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [AGTAGCTTGACAAAAATTATATTTGAAATAATCTCAGCTAACATCTCTAGACTTCTTCAGGGTGAAAGTCCAGACAAGTTAGCTGGACGAAACGTTGGAATTATTTAAATTTCAATCGCTAAGATTATTTCACATTCTGGTATGGTTTCTGGGAAATATTTCTGTTTCTAGACAAAATAATTTAGTGGGAATATAAAACCATCTAATAGCTTCACTTGAATAATCATCAGGAAAAAAAACTCTACGGTCACACAATCTACCATCTTTTCTTCAAAATGATTAAGGCATTTAAAAGTAAATGAAGATGAGTACAGATATTTTATCACCGGTATTCTCCCATCAGAAGCTTGAATCGGAACTACTGGGGTGTAATAAGCCTGGGTCAACTTGAGTAGCTATAATGTGTTAGATTTTTGGGATATGTTCTCTAATGTTATGTTGTATGTTGATCTGAGTAATTTTGTAATCGAAAACATTTTTTGTAATTTTAACTACATTA] [+] EMBL CD084416 [AGTAGCTTGACAAAAATTATATTTGAAATAATCTCAGCTAACATCTCTAGACTTCTTCAGGGTGAAAGTCCAGACAAGTTAGCTGGACGAAACGTTGGAATTATTTAAATTTCAATCGCTAAGATTATTTCACATTCTGGTATGGTTTCTGGGAAATATTTCTGTTTCTAGACAAAATAATTTAGTGGGAATATAAAACCATCTAATAGCTTCACTTGAATAATCATCAGGAAAAAAAACTCTACGGTCACACAATCTACCATCTTTTCTTCAAAATGATTAAGGCATTTAAAAGTAAATGAAGATGAGTACAGATATTTTATCACCGGTATTCTCCCATCAGAAGCTTGAATCGGAACTACTGGGGTGTAATAAGCCTGGGTCAACTTGAGTAGCTATAATGTGTTAGATTTTTGGGATATGTTCTCTAATGTTATGTTGTATGTTGATCTGAGTAATTTTGTAATCGAAAACATTTTTTGTAATTTTAACTACATTA] consensusID : consensus_6350#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TAAGAACTAAATGTTCGAAAAATTATATAATGAAGAAGTCCAGACAAGTTAGCTGGACGAAACGTTGGAATTATTTATATTTCAATCGCTGAGACTATTTCAAATATAATTTTTTCACATATAATGAATTAAAGTAATAGTTTTAGAATGTTAAGATAAATTTATTGGTCAAAACAGCAACAGTTTAGAAAGGTAAAGTGGGTGTGTAAGATCAGCTCGCTAATTTATGATTA] [+] EMBL CD185381 [TAAGAACTAAATGTTCGAAAAATTATATAATGAAGAAGTCCAGACAAGTTAGCTGGACGAAACGTTGGAATTATTTATATTTCAATCGCTGAGACTATTTCAAATATAATTTTTTCACATATAATGAATTAAAGTAATAGTTTTAGAATGTTAAGATAAATTTATTGGTCAAAACAGCAACAGTTTAGAAAGGTAAAGTGGGTGTGTAAGATCAGCTCGCTAATTTATGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 TATTTCTGTGATTAGTACAGAATTTCACCAATCAAAAAGGGTTAATTCTTACGTAA---C 57 consensus_6350#1 TATTCCC-TGATTAATTGCAACTGTCACAACTAATAAGACATGACAACAAACTCAAACTT 59 consensus_6350#2 ------------------------------------------------------------ consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 TTGTTACAATAATTAATCGATTATGTAATTTTAT-TTTGATTTTAATTTAGAAGCTAT-T 115 consensus_6350#1 TCTTTCCAGTTGTCATGCTTTNCTCTCGCTTTCTATTTGAATTCGTCGCACAAGCAACAC 119 consensus_6350#2 --------------------------AGTAGCTTGACAAAAATTATATTTGAAATAATCT 34 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 GAGTTATGTT-TTAACATTACAATGATGTACTTGATGATTC--TCATTTTTATTTGCAAT 172 consensus_6350#1 CATTTAAGTGATTNGCTGACCGATCGAATNTNCTGCAATNCGTCNATGAGCGCATACCAC 179 consensus_6350#2 CAGCTAACATCTCTAGACTTCTTCAGGGTGAAAGTCCAGAC---AAGTTAGCTGGACGAA 91 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 TCA-ATGATTCTTCAACCTTCA----ATTTGCACTTTTATTCTTATTTTTACTTCACATA 227 consensus_6350#1 TAACAAGACCATTTGCNCTGAACAGTNTTTGCACTCA-ACTGATGTCATCTTCGCAAGCA 238 consensus_6350#2 ACGTTGGAATTATTTAAATTTCAATCGCTAAGATTATTTCACATTCTGGTATGGTTTCTG 151 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 GAAACA-TATAAACACTCCAATATCATTCAT------------TAATAACTCATCTTAAA 274 consensus_6350#1 GTAACAATATGAGTTCCAGAATATAATTTATAATTGGTCTTCACACTAGCCTATGATGGN 298 consensus_6350#2 GGAAATATTTCTGTTTCTAGACAAAATAATTTAGTGG----GAATATAAAACCATCTAAT 207 consensus_6350#3 ----------TAAGAACTAAATGTTCGAAAAATTATATAAT-GAAGAAGTCCAGA----- 44 consensus_6350#0 ------CATACATACAC-ATACACACACA--------CAATTAATCCAGTCTCCT----- 314 consensus_6350#1 GGACTTCCTTCATCCACCACATCTAAACAGGAAATTTTAGTTGTNAGAGTCTCCNGTCTC 358 consensus_6350#2 AGCTTCACTTGAATAATCATCAGGAAAAAAAACTCTACGGT-CACACAATCTACCATCT- 265 * * * * * * ** consensus_6350#3 ---CAAGTTAGCTGGACGAAACGTTGGAATTATTTATATTTCAATCGCTGAGACTATTTC 101 consensus_6350#0 -TTTATTTCACATCGTTGAACTTTTCACTTGATTCTCATTCAACTGACTTATATTATCCT 373 consensus_6350#1 CTTTAATTCACATCGTTGAACTTTTCACTTGATCCTCATTCAACTGACTCATNTTATCCT 418 consensus_6350#2 -TTTCTTCAAAATGATTAAGGCATTTAA---AAGTAAATGAAGATGAGTACAGATATTTT 321 * * * ** * ** * * *** consensus_6350#3 AAATATAATTTTTTCACATATAA----TGAATTAAAGTAATAGTTTTAGAATGTTAAGAT 157 consensus_6350#0 GTTTACATTAATTCAACATCCAAA--TATGATTAGTTTTAC-GTAGTATAGTTTT----T 426 consensus_6350#1 GTTTACAAAAATTCGACATCCAAA--TNTGATTGGGATTAAAGTAGTAGAGTTTT----T 472 consensus_6350#2 ATCACCGGTATTCTCCCATCAGAAGCTTGAATCGGAACTACTGGGGTGTAATAAGCC--T 379 * *** * ** * * * * * * consensus_6350#3 AAATTTATTGGTCAAAACAGCAACAGTTTAGAAAGGTAAAGTG-GGTGTGTAAGATCAGC 216 consensus_6350#0 GATATGATTGTTAAAAAACACTATATATTTCTTTGATGATTT--GATTTTGATTATTATC 484 consensus_6350#1 GATATGATTGTTAAAAAACACTATATNTTTCTTTGANGANTTT-GATTTGGATTATTTCC 531 consensus_6350#2 GGGTCAACTTG-AGTAGCTATAATGTGTTAGATTTTTGGGATATGTTCTCTAATGTTATG 438 * * * * ** * * * * * * consensus_6350#3 TCGCTAATT--TATGATTA----------------------------------------- 233 consensus_6350#0 CTGAAGAAG--TCCAGACAAGTTAGCTGGACGAAACGTTGGAATTATTTAAATTTCAATC 542 consensus_6350#1 CTGAAAGAA--GTCAGAAAATT--GCTGGGACAAACTTGGGAATTATTTAAATT-CAATC 586 consensus_6350#2 TTGTATGTTGATCTGAGTAATTTTGTAATCGAAAACATTTTTTGTAATTTTAACTACATT 498 * * consensus_6350#3 -------------------------------------------------- consensus_6350#0 GCTGAGATTATTTAAATATGATTTTTCACATATAATGACTTCTCTATACT 592 consensus_6350#1 GCTG---------------------------------------------- 590 consensus_6350#2 A------------------------------------------------- 499 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||