These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 570 fasta sequence [AACTCAAGCTGTAGATGAAATGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAATGCAGAAATTCGACGTTTGAGTGAACTTGTCGATAGTTATTCGCGTCCTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTGAATGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTGCTCGATGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGTAAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCATCTCGATTGTCGTAATTTGTGTGCAAATTTTCGCGAAGATATTCAGTTTCGTTTTTCTCTTAGTTTGGGAACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGGACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCATTGACTGTTGATTTGTTCCCTTCTCTTATGAGCCG] [+] EMBL CD154027 [AACTCAAGCTGTAGATGAAATGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAATGCAGAAATTCGACGTTTGAGTGAACTTGTCGATAGTTATTCGCGTCCTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTGAATGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTGCTCGATGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGTAAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCATCTCGATTGTCGTAATTTGTGTGCAAATTTTCGCGAAGATATTCAGTTTCGTTTTTCTCTTAGTTTGGGAACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGGACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCATTGACTGTTGATTTGTTCCCTTCTCTTATGAGCCG] [-] EMBL CD131804 [ TAGTTATTCGCGTCCTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTGAACGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTGCTCGATGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGTAAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCATCTCGATTGTCGTAATTTGTGTGCAAATTTTCGCGAAGATATTCAGTTTCGTTTTTCTCTTAGTTTGGGAACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGGACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCATTGACTGTTGATTTGTTCCCTTCTCT ] consensusID : consensus_6365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 470 fasta sequence [AAATTTAGGTGGAGATCCACATTCAGGTCCTCCTGGAGCAGCTACAAGTATTGGGTCTCCTTTGTCAGCAGTGGCCTATATGGCTGAGGGTTGGCAAGACAGACTCGTGGAATTTACAAATTTCGAAACTGTTTTCGAGAAAAATCTTTCAGAGTCTGCTACTCGTACAAAATTTGCAGCCCATTCTGAACAAGGCAAGGATGTGGTGAATAGAGTCCGTACAATCATGGAAAATATCTATGAGACAACAGTTGAAGAAAAAGATGCTGCTGTTCGTTGTCGTCGTCTTTCTCAAGCACATCTTGAAGAGGTACGTGCTCGGNTGATGAAGACAAACTCAGGCTGTAGATGAAAAGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAAAGCAGAAATTCGACGTTNGAGTGAACTTGTCGATAGTNATTCGCGTCCCTTCCANCAATCACNA] [+] EMBL CD194126 [AAATTTAGGTGGAGATCCACATTCAGGTCCTCCTGGAGCAGCTACAAGTATTGGGTCTCCTTTGTCAGCAGTGGCCTATATGGCTGAGGGTTGGCAAGACAGACTCGTGGAATTTACAAATTTCGAAACTGTTTTCGAGAAAAATCTTTCAGAGTCTGCTACTCGTACAAAATTTGCAGCCCATTCTGAACAAGGCAAGGATGTGGTGAATAGAGTCCGTACAATCATGGAAAATATCTATGAGACAACAGTTGAAGAAAAAGATGCTGCTGTTCGTTGTCGTCGTCTTTCTCAAGCACATCTTGAAGAGGTACGTGCTCGGNTGATGAAGACAAACTCAG ] [-] EMBL CD178170 [ GAGTCTGCTACTCGCACAAAATGCGCAGCCCATTCTGAACAAGGCAAGAATGTGGTGAATAGAGTCCGTACAATCATGGAAAAGATCCATGAGACAACAGTTGAAGAAAAAGATGCTGCTGTTCGTTGTCGTCGTCTTTCTCAAGCACATCTTGAAGAGGTACGTGCTCGGTTGATGAAGAC AACTCAAGCTGTAGATGAAAAGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAAAGCAGAAATTCGACGTTNGAGTGAACTTGTCGATAGTNATTCGCGTCCCTTCCANCAATCACNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6365#0 AACTCAAGCTGTAGATGAAATGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGC 60 consensus_6365#1 ------AAATTTAGGTGGAGATCCACATTCAGGTC---CTCCTGGAGCAGCTACAAGTAT 51 * * *** ** * * *** * ** * * ** * **** * * consensus_6365#0 TAGTGCATTAAATGCAGAAATTCGACGTTTGAGTGAAC-TTGTCGATAGTTATTCGCGTC 119 consensus_6365#1 TGGGTCTCCTTTGTCAGCAGTGGCCTATATGGCTGAGGGTTGGCAAGACAGACTCGTGGA 111 * * * *** * * * ** *** *** * * * * *** * consensus_6365#0 CTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTG 179 consensus_6365#1 ATTTACA---------AATTTCGAAAC-TGTTTTCGAG---------AAAAATCTTTCAG 152 *** ** * ** ** * ** * * ** ** * ** * * consensus_6365#0 AATGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTG 239 consensus_6365#1 AGTCTGCTACTCGTACAAAATTTGC---AGCCCATTCTGAACAAGGCAAGGATGTGGTGA 209 * * ** * * **** ** * *** *** * *** ** consensus_6365#0 CTCGA-TGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGT 298 consensus_6365#1 ATAGAGTCCGTACAATCA-TGGAAAATATCTATGAGACAACAGTTGAAGAAAAAGATGCT 268 * ** * * ***** * ** **** *** * *** *** *** *** * * consensus_6365#0 AAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCAT-CTCGA 357 consensus_6365#1 GCTGTTCGTTGTCGTCGTCT------TTCTCAAGCACATCTTGAAGAGGTACGTGCTCGG 322 **** * ** ** * ** *** * * ** * * * **** consensus_6365#0 TTGTCGTAATTTGTGTGCAAATTTTCGC-GAAGATATTCAGTTTCGTTTTTCTCTTAGTT 416 consensus_6365#1 NTGATGAAG-------ACAAACTCAGGCTGTAGATGAAAAGCTTCAT------GCTAGTT 369 ** * * **** * ** * **** ** *** * ***** consensus_6365#0 TGGGA-ACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGG 475 consensus_6365#1 TGGCACGTGTTGAAGCTCAAGTTGCTAGT---GCATTAAAAG-CAGAAATTCGACGTTNG 425 *** * * ** * **** ** * * * ** * * * ** * consensus_6365#0 ACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCA 535 consensus_6365#1 AGTGAACTTGTCGATAGTNATTCGCGTCCCTTCCANCAATCACNA--------------- 470 * ** ** * * * *** ** * * ** * consensus_6365#0 TTGACTGTTGATTTGTTCCCTTCTCTTATGAGCCG 570 consensus_6365#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||