cluster # 6367

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Schistosoma mansoni
cluster # 6367 cluster # 6367 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6367#0 length = 403 sequences # 1
consensus_6367#1 length = 360 sequences # 1

consensus_6367#2 length = 323 sequences # 1
consensus_6367#3 length = 297 sequences # 1

consensusID : consensus_6367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TGGGTGGTGTAGTTGACTTGAGTTTTCCACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTTTAACGTACAGAAAAGAGACAGTGTCAATCAGTGTAATGAATGGAGAGTGGGTGAGAGAGCGATTGAGTGTGTGAGTGTGAGTGAGTGTGTGATTGAGTGATATGTGGGACTGAAGTAATGAATGTGATGTGTTGTGTGTGATTGGTTGGCGTGTTTGTGTGTGTGAGGTGCT]

[+] EMBL CD134151             [TGGGTGGTGTAGTTGACTTGAGTTTTCCACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTTTAACGTACAGAAAAGAGACAGTGTCAATCAGTGTAATGAATGGAGAGTGGGTGAGAGAGCGATTGAGTGTGTGAGTGTGAGTGAGTGTGTGATTGAGTGATATGTGGGACTGAAGTAATGAATGTGATGTGTTGTGTGTGATTGGTTGGCGTGTTTGTGTGTGTGAGGTGCT]




>consensus_6367#0
TGGGTGGTGTAGTTGACTTGAGTTTTCCACTTATGAGTAATTGTGAGGTGATAGTGTGTG
GATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCA
TCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGC
GTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTTTAACGTACA
GAAAAGAGACAGTGTCAATCAGTGTAATGAATGGAGAGTGGGTGAGAGAGCGATTGAGTG
TGTGAGTGTGAGTGAGTGTGTGATTGAGTGATATGTGGGACTGAAGTAATGAATGTGATG
TGTTGTGTGTGATTGGTTGGCGTGTTTGTGTGTGTGAGGTGCT

consensusID : consensus_6367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [TGTTGTGTGTGTAATGTGTGTTGTTTGTGTTCTGCGTCTGCTGCATGTAGACAGTAGACAATGTCTGCTTATGCGTGAGACGAACAGCACACATGAGACACGCAGCCTGACACACTCGTTCTAAAATACATAAAAAAAAAGTCAAAAACACTCTGACTACAAAGGAATGCAACATAAAGCAAATGTGAGATTGAGAACTTGAATATGGATTGGCATATCAAGATAGTCTGCTGATTGTGCCAAGTGTCGTAATGGTAAAACCCTTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTA]

[+] EMBL CD145527             [TGTTGTGTGTGTAATGTGTGTTGTTTGTGTTCTGCGTCTGCTGCATGTAGACAGTAGACAATGTCTGCTTATGCGTGAGACGAACAGCACACATGAGACACGCAGCCTGACACACTCGTTCTAAAATACATAAAAAAAAAGTCAAAAACACTCTGACTACAAAGGAATGCAACATAAAGCAAATGTGAGATTGAGAACTTGAATATGGATTGGCATATCAAGATAGTCTGCTGATTGTGCCAAGTGTCGTAATGGTAAAACCCTTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTA]




>consensus_6367#1
TGTTGTGTGTGTAATGTGTGTTGTTTGTGTTCTGCGTCTGCTGCATGTAGACAGTAGACA
ATGTCTGCTTATGCGTGAGACGAACAGCACACATGAGACACGCAGCCTGACACACTCGTT
CTAAAATACATAAAAAAAAAGTCAAAAACACTCTGACTACAAAGGAATGCAACATAAAGC
AAATGTGAGATTGAGAACTTGAATATGGATTGGCATATCAAGATAGTCTGCTGATTGTGC
CAAGTGTCGTAATGGTAAAACCCTTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGG
TGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTA

consensusID : consensus_6367#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [TTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGCAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAACCAGTGTGAATACGAAGGAATCCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGAT]

[-] EMBL CD084485             [TTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGCAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAACCAGTGTGAATACGAAGGAATCCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGAT]




>consensus_6367#2
TTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGA
AGCGAGAGGCAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCTGAGTGATTT
GTTCTAACGTACAGAAAAGAGACAGTGAAAACCAGTGTGAATACGAAGGAATCCAACATA
GAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATT
GTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGT
GAGGTGATAGTGTGTGGATTGAT

consensusID : consensus_6367#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [GAGGATTTCGCCCGGCCTGCAAGTATGGAATACAGAATTTCAAAAAAATTCACAATGAAACCGGGTCAACAAAAGATTTTTCTCCATCTGATTCCAATATTTTTACTACTGCAGTAACAACCCCATCGTACGCGAAAACGACATACTGCCAAGTCAGACATTAGAAATTTATCCAACTGAGCAGCTTTGAGCTACAAACCTACGTAAAGGATAGCTCCACCATATTCACAAGATTATACGTTCATGGAATATGTACTATGCTTAAGCCAATAGAAAATAATTCATAAAAGGAACCAC]

[+] EMBL CD065460             [GAGGATTTCGCCCGGCCTGCAAGTATGGAATACAGAATTTCAAAAAAATTCACAATGAAACCGGGTCAACAAAAGATTTTTCTCCATCTGATTCCAATATTTTTACTACTGCAGTAACAACCCCATCGTACGCGAAAACGACATACTGCCAAGTCAGACATTAGAAATTTATCCAACTGAGCAGCTTTGAGCTACAAACCTACGTAAAGGATAGCTCCACCATATTCACAAGATTATACGTTCATGGAATATGTACTATGCTTAAGCCAATAGAAAATAATTCATAAAAGGAACCAC]




>consensus_6367#3
GAGGATTTCGCCCGGCCTGCAAGTATGGAATACAGAATTTCAAAAAAATTCACAATGAAA
CCGGGTCAACAAAAGATTTTTCTCCATCTGATTCCAATATTTTTACTACTGCAGTAACAA
CCCCATCGTACGCGAAAACGACATACTGCCAAGTCAGACATTAGAAATTTATCCAACTGA
GCAGCTTTGAGCTACAAACCTACGTAAAGGATAGCTCCACCATATTCACAAGATTATACG
TTCATGGAATATGTACTATGCTTAAGCCAATAGAAAATAATTCATAAAAGGAACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6367#1      ---------------------------TGTTGTGTGTGTAAT-GTGTGTTGTTTGTGTTC 32
consensus_6367#2      ----------------------TTTTCTACT-TATGAGTAATTGTGAGGTGATAGTGTG- 36
consensus_6367#0      TGGGTGGTGTAGTTGACTTGAGTTTTCCACT-TATGAGTAATTGTGAGGTGATAGTGTG- 58
consensus_6367#3      -------------------------------------------GAGGATTTCGCCCGGCC 17
                                                                 * *   *      *   

consensus_6367#1      TGCGTCTGCTGCATGTAGACAGTAGACAAT-GTCTGCTTATGCGTGAGACGAACAGCACA 91
consensus_6367#2      TGGATTGATGGTATTGGATCAGGAAGCGAGAGGCAGAGAGAGATTGAGTAGTTTGTGGTT 96
consensus_6367#0      TGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTT 118
consensus_6367#3      TGCAAGTATGGAATACAGAATTTCAAAAAAATTCACAATGAAACCGGGTCAACAAAAGAT 77
                      **        * **              *                * *            

consensus_6367#1      CATGAGACACGCAGCCTG-ACACACTCGTTCTAAAATACATAAAAAAAA-AGTCAA--AA 147
consensus_6367#2      CATCAGCGAT--TGGCTG-AGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAA--AA 151
consensus_6367#0      CATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCAT 178
consensus_6367#3      TTTTCTCCATCTGATTCC--AATATTTTTACTA--CTGCAGTAACAACCCCATCGTACGC 133
                        *     *              *       *    *     *   *     *       

consensus_6367#1      ACACTCTGACTACAAAGGAATGCAACATAAAGCAAATGTGAGATTGAGAACTTGAATAT- 206
consensus_6367#2      CCAGTGTGAATACGAAGGAATCCAACATAGAGTATATGTGAGATTGTGAACTTGATTTT- 210
consensus_6367#0      GCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTTTAACGTA 238
consensus_6367#3      GAAAACGACATACTGCCAAGTCAGACATTAGAAATTTATCCAACTGAGCAGCTTTGAGCT 193
                                 *        *      *                        *       

consensus_6367#1      --GGATTGGCATATCA--AGATAGTCTGCTGATTGTGC--CAAGTGTCGTAATGGTAAAA 260
consensus_6367#2      --GGATTGGCATATCG--AGATTGTCTGTTGATTGTGC--CAGGTGTCGTGATGGTCGAT 264
consensus_6367#0      CAGAAAAGAGACAGTGTCAATCAGTGTAATGAATGGAGAGTGGGTGAGAGAGCGATTGAG 298
consensus_6367#3      ACAAACCTACGTAAAG---GATAGCTCCACCA-TATTCACAAGATTATACGTTCATGGAA 249
                          *       *          *       * *          *          *  * 

consensus_6367#1      CCCTTTGACTTGAGTTT-TCTACTTATGAGTAAT-TGTGAGGT---GATAGTGTGTG-GA 314
consensus_6367#2      GTAGTTGACTTGAGTTT-TCTACTTATGAGTAAT-TGTGAGGT---GATAGTGTGTG-GA 318
consensus_6367#0      TGTGTGAGTGTGAGTGAGTGTGTGATTGAGTGATATGTGGGACTGAAGTAATGAATGTGA 358
consensus_6367#3      TATGT--ACTATGCTTAAGCCAATAGAAAATAATTCATAAAAG--GAACCAC-------- 297
                          *         *             * * **   *                      

consensus_6367#1      TTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTA 360
consensus_6367#2      TTGAT----------------------------------------- 323
consensus_6367#0      TGTGTTGTGTGTGATTGGTTGGCGTGTTTGTGTGTGTGAGGTGCT- 403
consensus_6367#3      ----------------------------------------------