These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 574 fasta sequence [ACCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCCTCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAAGTAGGATTGTTGAATACACTATCAAAACCAGCACGCAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAG-TTTCCCAATGAGCGGTATCGAATTTGACAGAACT] [+] EMBL CD201032 [ACCTTTAGAGTTGAGAAGTTTACGTAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCCTCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCACTATTCGACAAAGTAGGATTGCTGAATACACTATCAAAACCAGCACGCAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAG TTTCCCAATGAGCGGTATCGAATTTGACAGAACT] [+] EMBL CD201018 [ACCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCCTCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAAGTAGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACANAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAGTTTTCCCA ] [-] EMBL CD200822 [ CCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCAATAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAAAAGCCCTCTGGATGCAGTAAAGATTTGCATATATACAGTGGAATAAAGCTCATTATTTGACAAAGTAGGAGTGTTGta ] consensusID : consensus_6414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [ATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAGGTAGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATGAGTGAGTTTCGAATCGCCAAACACTAGTTTCCCAATGAGCGGTATCGAATTCTGTGGAGAAATCAAAATAAGCTTGTACTTACTGACAGAACTTTTTGATCATCTAACTTTGTAGATAATATACCCCGGAAAAAACTATCTAGCAATTCTTTAATACATTGTGACTGTGAT] [+] EMBL CD093153 [ATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAGGTAGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATGAGTGAGTTTCGAATCGCCAAACACTAGTTTCCCAATGAGCGGTATCGAATTCTGTGGAGAAATCAAAATAAGCTTGTACTTACTGACAGAACTTTTTGATCATCTAACTTTGTAGATAATATACCCCGGAAAAAACTATCTAGCAATTCTTTAATACATTGTGACTGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6414#0 ACCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACT 60 consensus_6414#1 ------------------------------------------------------------ consensus_6414#0 AAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATG 120 consensus_6414#1 ------------------------------------------------------------ consensus_6414#0 TAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTC 180 consensus_6414#1 ------------------------------------------------------------ consensus_6414#0 ATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACA 240 consensus_6414#1 ------------------------------------------------------------ consensus_6414#0 GCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCC 300 consensus_6414#1 ------------------------------------------------------------ consensus_6414#0 TCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAAGT 360 consensus_6414#1 ----------------ATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAGGT 44 ***************************************** ** consensus_6414#0 AGGATTGTTGAATACACTATCAAAACCAGCACGCAGTGAGTTATATGATCCTAAACAGTC 420 consensus_6414#1 AGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTC 104 ********************************* ************************** consensus_6414#0 CTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTC 480 consensus_6414#1 CTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTC 164 ************************************************************ consensus_6414#0 AAGTCTACAAAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAG 540 consensus_6414#1 AAGTCTACAAAACAAGTATAGTGCCTCATTATGAGTGAGTTTCGAATCGCCAAACACTAG 224 ******************************** *************************** consensus_6414#0 TTTCCCAATGAGCGGTATCGAATTTGACAGAACT-------------------------- 574 consensus_6414#1 TTTCCCAATGAGCGGTATCGAATTCTGTGGAGAAATCAAAATAAGCTTGTACTTACTGAC 284 ************************ ** consensus_6414#0 ------------------------------------------------------------ consensus_6414#1 AGAACTTTTTGATCATCTAACTTTGTAGATAATATACCCCGGAAAAAACTATCTAGCAAT 344 consensus_6414#0 ------------------------ consensus_6414#1 TCTTTAATACATTGTGACTGTGAT 368 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||