These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGCAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTATTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCCGTAGTCTTGTAAGCTTCAGTATCCTGAGATTCAGTGATCATCTCGGTGGTTGCCGCATCGATTACAGTTTCTATTGTCAAACCACTTGATGTACCGAAGTATATTTGATCTGAACCATTGGCAACTATTTCTGCTATGTATTCCACAACCGCATTGCGAACAGNGTCTTCTGTCACTACAGCTGATGAAAAGTTCTCACTAGTGCTACTATAATCGATGACTAGCATCGCATTTCCAATAACTGATCCACGTGAGAAGCCAACAACTGTGCCAGTGACATTGATTATTCCCCTTGATGTAAGT] [+] EMBL CD113699 [CACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGCAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTATTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCCGTAGTCTTGTAAGCTTCAGTATCCTGAGATTCAGTGATCATCTCGGTGGTTGCCGCATCGATTACAGTTTCTATTGTCAAACCACTTGATGTACCGAAGTATATTTGATCTGAACCATTGGCAACTATTTCTGCTATGTATTCCACAACCGCATTGCGAACAGNGTCTTCTGTCACTACAGCTGATGAAAAGTTCTCACTAGTGCTACTATAATCGATGACTAGCATCGCATTTCCAATAACTGATCCACGTGAGAAGCCAACAACTGTGCCAGTGACATTGATTATTCCCCTTGATGTAAGT] consensusID : consensus_6415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 210 fasta sequence [GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC] [-] EMBL CD164264 [GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC] [-] EMBL CD164246 [GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC] [-] EMBL CD164250 [GTCACCGTAATGTGGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6415#0 CACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGCAATATCGATCTCCGTCGTCA 60 consensus_6415#1 -----------------GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCA 43 ****** * * ** ******* ******************** consensus_6415#0 CTTCCGTCGTGTCAGTATTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCT 120 consensus_6415#1 CTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCT 103 ***************** ****************************************** consensus_6415#0 CCGTAATGTCGGTCTCCGT---------------AATATCGATCTCCGTCGTCACTTCCG 165 consensus_6415#1 CCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCG 163 ******************* ************************** consensus_6415#0 TCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAA 225 consensus_6415#1 TCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC------------- 210 *********************************************** consensus_6415#0 TGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCAC 285 consensus_6415#1 ------------------------------------------------------------ consensus_6415#0 CCGTAGTCTTGTAAGCTTCAGTATCCTGAGATTCAGTGATCATCTCGGTGGTTGCCGCAT 345 consensus_6415#1 ------------------------------------------------------------ consensus_6415#0 CGATTACAGTTTCTATTGTCAAACCACTTGATGTACCGAAGTATATTTGATCTGAACCAT 405 consensus_6415#1 ------------------------------------------------------------ consensus_6415#0 TGGCAACTATTTCTGCTATGTATTCCACAACCGCATTGCGAACAGNGTCTTCTGTCACTA 465 consensus_6415#1 ------------------------------------------------------------ consensus_6415#0 CAGCTGATGAAAAGTTCTCACTAGTGCTACTATAATCGATGACTAGCATCGCATTTCCAA 525 consensus_6415#1 ------------------------------------------------------------ consensus_6415#0 TAACTGATCCACGTGAGAAGCCAACAACTGTGCCAGTGACATTGATTATTCCCCTTGATG 585 consensus_6415#1 ------------------------------------------------------------ consensus_6415#0 TAAGT 590 consensus_6415#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||