cluster # 6482

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Schistosoma mansoni
cluster # 6482 cluster # 6482 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6482#0 length = 571 sequences # 3

consensus_6482#1 length = 377 sequences # 1

consensusID : consensus_6482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 571
fasta sequence

                              [GTGAATTCCTAGATATGAAGCGATGCAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGATGAATTATTTGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTTTTTCACTTCGTCCACTGCGCACACTTTCTCCATCCATATATCACCATTT]

[+] EMBL CD160645             [GTGAATTCCTAGATATGAAGCGATGCAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGATGAATTATTTGTTGGGCATATACCTGTTGTACGGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAACGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTTTTTCACTTCGTCCACTGCGCACACTTTCTCCATCCATATATCACCATTT]
[+] EMBL CD146970             [                                                                                                                                TGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTT                                                 ]
[+] EMBL CD146773             [                                                                                                                                TGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGC                                                    ]




>consensus_6482#0
GTGAATTCCTAGATATGAAGCGATGCAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTT
GATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGAT
GAATTATTTGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAG
GGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGG
GAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCT
GTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGAC
GGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAG
CTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTAC
TTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTTTTTCACTTCGTCCACTGC
GCACACTTTCTCCATCCATATATCACCATTT

consensusID : consensus_6482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [AGCCGGTACCACCATTGGCATGTATACCTAGTGAAGTTGCTAGGCCGTAACGTGCTCCAAACCGTGAGAAATTGTCACCACTGAGTCCAGTCTCACTTGTAGCGCCAGTGACAGCAGTAGCCTCCTCAACCCAAGCATTTTCATCTCGGTTTGTAAGTTGTGAGTCAAAACGCTCAGATCGGTATGGCTCAGGAACTTGTGATGATGGTTGAGAAGGTATCTGGGAAGGCGAAACGTGGGATGCAGCAGTATGTGCTAAAGGATGCTGTTGTCCAGGAGGTATGAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGG]

[+] EMBL CD184589             [AGCCGGTACCACCATTGGCATGTATACCTAGTGAAGTTGCTAGGCCGTAACGTGCTCCAAACCGTGAGAAATTGTCACCACTGAGTCCAGTCTCACTTGTAGCGCCAGTGACAGCAGTAGCCTCCTCAACCCAAGCATTTTCATCTCGGTTTGTAAGTTGTGAGTCAAAACGCTCAGATCGGTATGGCTCAGGAACTTGTGATGATGGTTGAGAAGGTATCTGGGAAGGCGAAACGTGGGATGCAGCAGTATGTGCTAAAGGATGCTGTTGTCCAGGAGGTATGAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGG]




>consensus_6482#1
AGCCGGTACCACCATTGGCATGTATACCTAGTGAAGTTGCTAGGCCGTAACGTGCTCCAA
ACCGTGAGAAATTGTCACCACTGAGTCCAGTCTCACTTGTAGCGCCAGTGACAGCAGTAG
CCTCCTCAACCCAAGCATTTTCATCTCGGTTTGTAAGTTGTGAGTCAAAACGCTCAGATC
GGTATGGCTCAGGAACTTGTGATGATGGTTGAGAAGGTATCTGGGAAGGCGAAACGTGGG
ATGCAGCAGTATGTGCTAAAGGATGCTGTTGTCCAGGAGGTATGAAAGAACCGACCTGTT
GTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATG
GAGAAGGCATGGACGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6482#0      GTGAATTCCTAGATATGAAGCGATGCAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTT 60
consensus_6482#1      -----------------AGCCGGTACCACCA-TTGGCATG----TATACCTAGTGAAGTT 38
                                       *  ** * * *  *   * * **    * *    * *******

consensus_6482#0      GATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGAT 120
consensus_6482#1      G-CTAGGCCGTAACGTGCTCCAAACCGTGAG------AAATTGTCACCACTGAGTCCAGT 91
                      *  * *   ***        ****  * * *       *** *  *   *   * *   *

consensus_6482#0      GAATTATTTGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAG 180
consensus_6482#1      C--TCACTTGTAGCGCCAGTGACAGCAGTA--GCCTCCTCAACCCAAGCATTTTCATCTC 147
                         * * **** * **   *  * *  ***  *  *  **   ****   *   * *   

consensus_6482#0      GGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATT-GGCATTAAAGAG 239
consensus_6482#1      GG-TTTGTAAGTTG---TGAGTCAAAACGCTCAGATCGGTATGGCTCAGGAACTTGTGAT 203
                      ** * *  * * *    ****   **  *   * ** ** **   *  ** * *   ** 

consensus_6482#0      GGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGC 299
consensus_6482#1      GATGGTTGAGAAGGTA-TCTGGGAAGGCGAAACGTGGGATGCAGCAGT------ATGTGC 256
                      *        *    ** * *   * *  ** *  * ** **  *** *         ***

consensus_6482#0      TGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGA 359
consensus_6482#1      TAAAGGATGCTGTTGTCCAGGAGGTATGAAAGAACCGACCTGTTGTTG--TTGTGACTGA 314
                      *   * *   ** *     *  * * **  * *** * * *    ***  *** ** ***

consensus_6482#0      CGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAA 419
consensus_6482#1      AGTTGATTTGATTGTAC-TCCTGCACAAATTG---GGGGTCGGGTGAATGG--AGAAGGC 368
                       *   *  **  *  ** *  ****     **        *  ***  ***  *  **  

consensus_6482#0      GCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTA 479
consensus_6482#1      ATGGACGGG--------------------------------------------------- 377
                          **                                                      

consensus_6482#0      CTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTTTTTCACTTCGTCCACTG 539
consensus_6482#1      ------------------------------------------------------------
                                                                                  

consensus_6482#0      CGCACACTTTCTCCATCCATATATCACCATTT 571
consensus_6482#1      --------------------------------