These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence [ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAGGAGTATAAGATGAATTCTAAAATGGAACGCAATATTTCATCAATACAGAATTCAAATACTGTCAAGCTTGAATGTAACTGGGGAATGTCGTTAGAAGATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAACGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGAATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAACGTTTAAATCGTATGCNGTCATTANGGAGTGAAGATGATNGAA] [+] EMBL CD149057 [ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAGGAGTATAAGATGAATTCTAAAATGGAACGCAATATTTCATCAATACAGAATTCAAATACTGTCAAGCTTGAATGTAACTGGGGAATGTCGTTAGAAGATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAACGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGAATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAACGTTTAAATCGTATGCNGTCATTANGGAGTGAAGATGATNGAA] [+] EMBL CD148908 [ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAAGAGTATAAGATAAATTCTAAAAGGGAACGCATTATTTAATCATTACAAAATTCAAATCCGGTCAACCTTGATGGTACCTGGGGAAGGTCGTTAAAAAATCCTGTCTTTGAACCAATTCCAACTTTATTCCAACCTGAAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAACGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGA ] consensusID : consensus_6485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [GCTGGTGAAACACTCACTGTAACCTTTGGAGGTCGCAGGTCCGATCCCTGATGACTAGGCATACTGTTGAGGAGCCCGATAATAGGCCAAAATATTTATCCAGTGCTTCCTGGTTTGTAATAGTTATTTTATTAAGATTTATCAGTGATGTTAAATATTAAATTTGTTTTAATTACTTAATATATCTTTATCTGAATAAAATTTTACGTTTTCTTTTGTCGTTATTGTTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAAACGTNTAATCGTATGCGTCAATTANGAGTGAAAGATGATGAAATTAAAACAACAAGCGAACTACTGGACAATCATAATGCTGAAATTCATCT] [+] EMBL CD134612 [GCTGGTGAAACACTCACTGTAACCTTTGGAGGTCGCAGGTCCGATCCCTGATGACTAGGCATACTGTTGAGGAGCCCGATAATAGGCCAAAATATTTATCCAGTGCTTCCTGGTTTGTAATAGTTATTTTATTAAGATTTATCAGTGATGTTAAATATTAAATTTGTTTTAATTACTTAATATATCTTTATCTGAATAAAATTTTACGTTTTCTTTTGTCGTTATTGTTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAAACGTNTAATCGTATGCGTCAATTANGAGTGAAAGATGATGAAATTAAAACAACAAGCGAACTACTGGACAATCATAATGCTGAAATTCATCT] consensusID : consensus_6485#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [GATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAGCGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGATTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAG] [-] EMBL CD202665 [GATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAGCGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGATTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6485#0 ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAGGAGTATA 60 consensus_6485#2 ------------------------------------------------------------ consensus_6485#1 ------------------------------------------------------------ consensus_6485#0 AGATGAATTCTAAAATGGAACGCAATATTTCATCAATACAGAATTCAAATACTGTCAAGC 120 consensus_6485#2 ------------------------------------------------------------ consensus_6485#1 ----------------------------------------------------GCTGGTGA 8 consensus_6485#0 TTGAATGTAACTGGGGAATGTCGTTAGAAGATCCTGTCTCTGA-ACCAATTCCAACTTTA 179 consensus_6485#2 -----------------------------GATCCTGTCTCTGA-ACCAATTCCAACTTTA 30 consensus_6485#1 AACACTCACTGTAACCTTTGGAGGTCGCAGGTCCGATCCCTGATGACTAGGCATACTGTT 68 * *** ** **** * * * *** * consensus_6485#0 TTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCA 239 consensus_6485#2 TTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCA 90 consensus_6485#1 GAGGAGCCCGATAATAGGCCAAA--ATATTTATCCAGTGCTTCCTGGTTTGTAATAGTTA 126 * * * * * * ** ** * * * * ** * ** * * consensus_6485#0 TTGAATGCATATTT-TGAACGAGAGGGAAT--------TGATCCTATTCCGCAGTTTGAA 290 consensus_6485#2 TTGAATGCATATTT-TGAGCGAGAGGGAAT--------TGATCCTATTCCGCAGTTTGAA 141 consensus_6485#1 TTTTATTAAGATTTATCAGTGATGTTAAATATTAAATTTGTTTTAATTACTTAATATATC 186 ** ** * **** * * ** *** ** * *** * * * * consensus_6485#0 TTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGA------------ATTGCCG 338 consensus_6485#2 TTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGATTACTAACAAAGATTGCCG 201 consensus_6485#1 TTTATCTGAATAAAATTTTACGTTTTCTTTTGTCGTTATTGTTACTAACAAAGATTGCCG 246 *** * * * **** ***** * ******* consensus_6485#0 TTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTT 398 consensus_6485#2 TTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAG----- 256 consensus_6485#1 TTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTT 306 ******************************************************* consensus_6485#0 GTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGAC 458 consensus_6485#2 ------------------------------------------------------------ consensus_6485#1 GTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGAC 366 consensus_6485#0 AAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGAC 518 consensus_6485#2 ------------------------------------------------------------ consensus_6485#1 AAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGAC 426 consensus_6485#0 TACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAACGTT 578 consensus_6485#2 ------------------------------------------------------------ consensus_6485#1 TACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAAACGT 486 consensus_6485#0 TAAATCGTATGCNGTCATTANGGAGTGAAGATGATNGAA--------------------- 617 consensus_6485#2 ------------------------------------------------------------ consensus_6485#1 NTAATCGTATGCGTCAATTANGAGTGAAAGATGATGAAATTAAAACAACAAGCGAACTAC 546 consensus_6485#0 ---------------------------- consensus_6485#2 ---------------------------- consensus_6485#1 TGGACAATCATAATGCTGAAATTCATCT 574 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||