These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence [ATGGACTTGTGTTGAAGTTGCGCGGACTGTTGGGCCTGCCGACGGGTCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAGAAGCAACTCAAAGACGAAGTTAGAGCCAGGATATATTTGTGTAAAAGATCT] [+] EMBL CD189489 [ATGGACTTGTGTTGAAGTTGCGCGGACTGTTGGGCCTGCCGACGGGTCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAGAAGCAACTCAAAGAC ] [-] EMBL CD165967 [ TCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAGAAGCAACTCAAAGACGAAGTTAGAGCCAGGATATATTTGTGTAAAAGATCT] consensusID : consensus_6489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 235 fasta sequence [TGATGGATGGCGGATCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGAC] [-] EMBL BG930308 [TGATGGATGGCGGATCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGAC] [-] EMBL BG931975 [TGATGGATGGCGGATCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6489#0 ATGGACTTGTGTTGAAGTTGCGCGGACTGTTGGGCCTGCCGACGGGTCGTCGTTTCTTCG 60 consensus_6489#1 --------------------------------TGATGGATGGCGGATCGTCGTTTCTTCG 28 * * * *** ************** consensus_6489#0 ACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGG 120 consensus_6489#1 ACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGG 88 ************************************************************ consensus_6489#0 TTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCG 180 consensus_6489#1 TTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCG 148 ************************************************************ consensus_6489#0 TTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTT 240 consensus_6489#1 TTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTT 208 ************************************************************ consensus_6489#0 AACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAG 300 consensus_6489#1 AACAGATTTGAAGGAACCTCTCAAGAC--------------------------------- 235 ************************* * consensus_6489#0 AAGCAACTCAAAGACGAAGTTAGAGCCAGGATATATTTGTGTAAAAGATCT 351 consensus_6489#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||