cluster # 6489

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6489 cluster # 6489 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6489#0 length = 351 sequences # 2

consensus_6489#1 length = 235 sequences # 2

consensusID : consensus_6489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 351
fasta sequence

                              [ATGGACTTGTGTTGAAGTTGCGCGGACTGTTGGGCCTGCCGACGGGTCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAGAAGCAACTCAAAGACGAAGTTAGAGCCAGGATATATTTGTGTAAAAGATCT]

[+] EMBL CD189489             [ATGGACTTGTGTTGAAGTTGCGCGGACTGTTGGGCCTGCCGACGGGTCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAGAAGCAACTCAAAGAC                                    ]
[-] EMBL CD165967             [                                                                        TCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAGAAGCAACTCAAAGACGAAGTTAGAGCCAGGATATATTTGTGTAAAAGATCT]




>consensus_6489#0
ATGGACTTGTGTTGAAGTTGCGCGGACTGTTGGGCCTGCCGACGGGTCGTCGTTTCTTCG
ACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGG
TTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCG
TTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTT
AACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAG
AAGCAACTCAAAGACGAAGTTAGAGCCAGGATATATTTGTGTAAAAGATCT

consensusID : consensus_6489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 235
fasta sequence

                              [TGATGGATGGCGGATCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGAC]

[-] EMBL BG930308             [TGATGGATGGCGGATCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGAC]
[-] EMBL BG931975             [TGATGGATGGCGGATCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGAC]




>consensus_6489#1
TGATGGATGGCGGATCGTCGTTTCTTCGACCATACTACGATCCTATTGTGAAGCTTCTGT
GCCGGACTAACTTTACAGTGTATGCTGGTTGAATGTCTATTATTCAACATCTGGGAACAG
ACGAAAAAGAATCGAGCTCCTTTCTGCGTTTGCGGTATTTGTCTCTGCTACACAAAATTA
GCAGGGACTGCTCAGTTCTACTTTATTTAACAGATTTGAAGGAACCTCTCAAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6489#0      ATGGACTTGTGTTGAAGTTGCGCGGACTGTTGGGCCTGCCGACGGGTCGTCGTTTCTTCG 60
consensus_6489#1      --------------------------------TGATGGATGGCGGATCGTCGTTTCTTCG 28
                                                       *   *  * *** **************

consensus_6489#0      ACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGG 120
consensus_6489#1      ACCATACTACGATCCTATTGTGAAGCTTCTGTGCCGGACTAACTTTACAGTGTATGCTGG 88
                      ************************************************************

consensus_6489#0      TTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCG 180
consensus_6489#1      TTGAATGTCTATTATTCAACATCTGGGAACAGACGAAAAAGAATCGAGCTCCTTTCTGCG 148
                      ************************************************************

consensus_6489#0      TTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTT 240
consensus_6489#1      TTTGCGGTATTTGTCTCTGCTACACAAAATTAGCAGGGACTGCTCAGTTCTACTTTATTT 208
                      ************************************************************

consensus_6489#0      AACAGATTTGAAGGAACCTCTCAAGGCCACCCTAAATATTTGGTGCCCTTCAGATATAAG 300
consensus_6489#1      AACAGATTTGAAGGAACCTCTCAAGAC--------------------------------- 235
                      ************************* *                                 

consensus_6489#0      AAGCAACTCAAAGACGAAGTTAGAGCCAGGATATATTTGTGTAAAAGATCT 351
consensus_6489#1      ---------------------------------------------------