These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 945 fasta sequence [GAGCCATATTCGGCACGAGGCGGTTTTACTCTTGTGATTTGTTGCATGGACTATGGGATCTAATGAGGAATATCCTTCTCCATCAGGGAATCTACCACTTCAGTTTTCGGCTAAACGGATTTCCAAAGCTCGTAAGTCTGGTTCCGGAGACCACCAAAAATGCAGTCCGCTTAGAAAAAATCATGTTGACGATCCAAACGGCATTATCGTCGCTCCTCCCATTGATAGTCGAGAACTTGATCGCCTTAAATTCACTAACCCAGGTAGACAGATGGAAGAACTAGAAGTCGGTTGGTCCGAAGCAAATATGACACGAAGTGTTCGCAGACAAATGAGCGTTAAATCTAGTTATAAATCATCAGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAGTTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTNTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTAT-AAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGANTAC-AATATTCATTGGAGGAAATGTTAGATACCTG-AAGTACCACTAAA-TATTTGCATTCTCCTTTCCAAAAT-AATACT] [+] EMBL CD081609 [GAGCCATATTCGGCACGAGGCGGTTTTACTCTTGTGATTTGTTGCATGGACTATGGGATCTAATGAGGAATATCCTTCTCCATCAGGGAATCTACCACTTCAGTTTTCGGCTAAACGGATTTCCAAAGCTCGTAAGTCTGGTTCCGGAGACCACCAAAAATGCAGTCCGCTTAGAAAAAATCATGTTGACGATCCAAACGGCATTATCGTCGCTCCTCCCATTGATAGTCGAGAACTTGATCGCCTTAAATTCACTAACCCAGGTAGACAGATGGAAGAACTAGAAGTCGGTTGGTCCGAAGCAAATATGACACGAAGTGTTCGCAGACAAATGAGCGTTAAATCTAGTTATAAATCATCAGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAGTTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTNTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTAT AAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGANTAC AATATTCATTGGAGGAAATGTTAGATACCTG AAGTACCACTAAA TATTTGCATTCTCCTTTCCAAAAT AATAC ] [-] EMBL CD075432 [ CAGACAAATGAGCGTTAAATCTAGTTATAAATCATCAGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAGTTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGG AATGTTAGATAACTGAAAGTACCACTAAATTATTTGCATTCTCCTTTCCAAAATAAATACT] [+] EMBL CD065770 [ ttgGCGA TGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTCTACGTTTGGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTT ] consensusID : consensus_6530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CCATCTAATTTAACAGCAATCTTTTGTTTGTTGAATCGAGTTAAACATATTTTCTAATTATCTCGTTTACTTTCTTGTTTTTACTTTAGGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGGAATGTTAGATAACTGAAAGTACCA] [-] EMBL CD152391 [CCATCTAATTTAACAGCAATCTTTTGTTTGTTGAATCGAGTTAAACATATTTTCTAATTATCTCGTTTACTTTCTTGTTTTTACTTTAGGTTAAACTGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTTACCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATGTCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATATAACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATTAGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTTCTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGGAATGTTAGATAACTGAAAGTACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6530#0 GAGCCATATTCGGCACGAGGCGGTTTTACTCTTGTGATTTGTTGCATGGACTATGGGATC 60 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 TAATGAGGAATATCCTTCTCCATCAGGGAATCTACCACTTCAGTTTTCGGCTAAACGGAT 120 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 TTCCAAAGCTCGTAAGTCTGGTTCCGGAGACCACCAAAAATGCAGTCCGCTTAGAAAAAA 180 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 TCATGTTGACGATCCAAACGGCATTATCGTCGCTCCTCCCATTGATAGTCGAGAACTTGA 240 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 TCGCCTTAAATTCACTAACCCAGGTAGACAGATGGAAGAACTAGAAGTCGGTTGGTCCGA 300 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 AGCAAATATGACACGAAGTGTTCGCAGACAAATGAGCGTTAAATCTAGTTATAAATCATC 360 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 AGATCGGTTGCATCCGTTATATGATTCTCGTGGCCGCCTTTTAGGAACTTTGGACTATAG 420 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 TTGCGATTGTCTAAAATCTGAATGTCCTGGGTGTCATTTACCATGTCGTCGGTGCCATTC 480 consensus_6530#1 -----------------CCATCTAATTTAACAGCAATCTTTTGTTTGTTGAATCGAGTTA 43 * * * * ** * * * * * ** consensus_6530#0 TACGT-TTTGTGGAGCATCATGTCGAATTTATCGAACTTATCGTGTTAATGAAGTTAAAC 539 consensus_6530#1 AACATATTTTCTAATTATCTCGTTTACTTTCTTGTTTTTACTTT-------AGGTTAAAC 96 ** * *** * *** ** * *** * * *** * * ******* consensus_6530#0 TGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTT-A 598 consensus_6530#1 TGTTTATCTGACTTCATGAGTTCAATCGTTTGTCGTTATCCACCACTAAAGTTTTTTTTA 156 ********************************************************** * consensus_6530#0 CCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATG 658 consensus_6530#1 CCATCTTTTTATCCAAATAAATTATTATTATTATTATTATTATTCAATGAGAGTTTTATG 216 ************************************************************ consensus_6530#0 TCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATAT 718 consensus_6530#1 TCTCTACGTTTACTTTAAATATCAATTATCTCAGAAAAAATACGTGTATTTCCCGAATAT 276 ************************************************************ consensus_6530#0 AACATGAACATTNTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATT 778 consensus_6530#1 AACATGAACATTTTAAATGTCTTCGCTCAAGCTTACTGCCATTTATTCAGCATGATTATT 336 ************ *********************************************** consensus_6530#0 AGTCATACCCTCTATAAA-GCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTT 837 consensus_6530#1 AGTCATACCCTCTATAAAAGCAATAATGAAAAGCGTTTAACTTCTTCCTAGGACATATTT 396 ****************** ***************************************** consensus_6530#0 CTCAGTGTGGACTGTTCATTTAATAACTGANTACAA-TATTCATTGGAGGAAATGTTAGA 896 consensus_6530#1 CTCAGTGTGGACTGTTCATTTAATAACTGATAACAAATATTCATTGGAGGAA-TGTTAGA 455 ****************************** **** *************** ******* consensus_6530#0 TACCTGAA-GTACCACTAAATATTTGCATTCTCCTTTCCAAAATAATACT 945 consensus_6530#1 TAACTGAAAGTACCA----------------------------------- 470 ** ***** ****** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||