cluster # 655

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Schistosoma mansoni
cluster # 655 cluster # 655 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_655#0 length = 1011 sequences # 1

consensus_655#1 length = 437 sequences # 1

consensusID : consensus_655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1011
fasta sequence

                              [GAGGTTCAAATCCATTAAATTTTTATGAAGAGAATGTTTCTAACTTACCTACTCAATATTATGATGATACACTTGGTTGCCAACTTCGTCATCATCAACAACATCATAATCCCAATCTGGCTTCACAATTTTATAGTACAGACATTCATCATTTGCTACGATCAGAAGATAATCGCGGTAACTGCGGTAAATATCTAAACAGTGCTTTATCCACATCACCTTCAGGTTATAAACCGAGTGGAATTTTCAACCGAATAAACATCGATAAGGTACAACAATATTCACAGCCTCCTATACTAATTCCCCAAAGTCATCCTGAATACCGAAGGAAATCTCAGATTCATAATCAAACTATAAGTACAATATCAACACAATTAGAGCCGTGGTATGCCTCAGCTGCTATCGGTTTGCCGAACAGTAGTAGTAATAGTAATAGCAATCGTCGATTAATGTCGGATTATGGTACATCACCAATAGATATGACGAATACACATCAATATCGTCATGAACATGTTGTCAGTCGTGATGAAAACAATGATAACAACCATGAGGAAAGCTTTCGATTCCCGCCTAAAATGCCAATCCTATCTGAAAGGCATAAATTATATGACGTCAACTCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTNTNTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAAATCATTCCCTTCGAAAGACCATCTACCACACTTAAGAGAACCAATGAATNNTTGAACACAGTCACCTCATACTACNTATTCCTNCCANACGTNNCGCTACATTAATCAGAAACATTNCTTCTCTGTACCNNGTACACTATGNATGACACATGAACCTNGAGCACANNGATGTNATTTTTCTATGACTATTTCAGGTAACAACAGAANNTGGNCCTTTATTACTTTTTCTCGAATTTNCTCTCCNTTAACTCNTTNACCNTGNTACGTNAANNTAAAACATAAAACATAA]

[+] EMBL CD081273             [GAGGTTCAAATCCATTAAATTTTTATGAAGAGAATGTTTCTAACTTACCTACTCAATATTATGATGATACACTTGGTTGCCAACTTCGTCATCATCAACAACATCATAATCCCAATCTGGCTTCACAATTTTATAGTACAGACATTCATCATTTGCTACGATCAGAAGATAATCGCGGTAACTGCGGTAAATATCTAAACAGTGCTTTATCCACATCACCTTCAGGTTATAAACCGAGTGGAATTTTCAACCGAATAAACATCGATAAGGTACAACAATATTCACAGCCTCCTATACTAATTCCCCAAAGTCATCCTGAATACCGAAGGAAATCTCAGATTCATAATCAAACTATAAGTACAATATCAACACAATTAGAGCCGTGGTATGCCTCAGCTGCTATCGGTTTGCCGAACAGTAGTAGTAATAGTAATAGCAATCGTCGATTAATGTCGGATTATGGTACATCACCAATAGATATGACGAATACACATCAATATCGTCATGAACATGTTGTCAGTCGTGATGAAAACAATGATAACAACCATGAGGAAAGCTTTCGATTCCCGCCTAAAATGCCAATCCTATCTGAAAGGCATAAATTATATGACGTCAACTCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTNTNTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAAATCATTCCCTTCGAAAGACCATCTACCACACTTAAGAGAACCAATGAATNNTTGAACACAGTCACCTCATACTACNTATTCCTNCCANACGTNNCGCTACATTAATCAGAAACATTNCTTCTCTGTACCNNGTACACTATGNATGACACATGAACCTNGAGCACANNGATGTNATTTTTCTATGACTATTTCAGGTAACAACAGAANNTGGNCCTTTATTACTTTTTCTCGAATTTNCTCTCCNTTAACTCNTTNACCNTGNTACGTNAANNTAAAACATAAAACATAA]




>consensus_655#0
GAGGTTCAAATCCATTAAATTTTTATGAAGAGAATGTTTCTAACTTACCTACTCAATATT
ATGATGATACACTTGGTTGCCAACTTCGTCATCATCAACAACATCATAATCCCAATCTGG
CTTCACAATTTTATAGTACAGACATTCATCATTTGCTACGATCAGAAGATAATCGCGGTA
ACTGCGGTAAATATCTAAACAGTGCTTTATCCACATCACCTTCAGGTTATAAACCGAGTG
GAATTTTCAACCGAATAAACATCGATAAGGTACAACAATATTCACAGCCTCCTATACTAA
TTCCCCAAAGTCATCCTGAATACCGAAGGAAATCTCAGATTCATAATCAAACTATAAGTA
CAATATCAACACAATTAGAGCCGTGGTATGCCTCAGCTGCTATCGGTTTGCCGAACAGTA
GTAGTAATAGTAATAGCAATCGTCGATTAATGTCGGATTATGGTACATCACCAATAGATA
TGACGAATACACATCAATATCGTCATGAACATGTTGTCAGTCGTGATGAAAACAATGATA
ACAACCATGAGGAAAGCTTTCGATTCCCGCCTAAAATGCCAATCCTATCTGAAAGGCATA
AATTATATGACGTCAACTCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACC
ATTCCTATAGCTCTAACTNTNTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTG
AAATCATTCCCTTCGAAAGACCATCTACCACACTTAAGAGAACCAATGAATNNTTGAACA
CAGTCACCTCATACTACNTATTCCTNCCANACGTNNCGCTACATTAATCAGAAACATTNC
TTCTCTGTACCNNGTACACTATGNATGACACATGAACCTNGAGCACANNGATGTNATTTT
TCTATGACTATTTCAGGTAACAACAGAANNTGGNCCTTTATTACTTTTTCTCGAATTTNC
TCTCCNTTAACTCNTTNACCNTGNTACGTNAANNTAAAACATAAAACATAA

consensusID : consensus_655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [TCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTTTTTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAATCAATTCCCTTTGAAAGACCATTTAACCCACACTTAAGAGAACCAAATGAATTTTTTGAACAACAGTCACCTTCATCACTACTATTTCCCTCCCCATCACGTCCGCCTCACATTACATCAGAAAACATTCCTTCCTCTGTACCGGTAACAACTTATTGTATGACACCATGAACCTTGGAGCCCAGTGATGTTTATTTTTTTAATGACTATTTTCAGGTTAACAAACAAGACATTGGGCTTTTATTTTACTTTTTTCTCGAATTTTTTTTTTTCCCTTATACTTCTTTCCCCTTGTATACGTTTAAGTTTAAATAACATTAAACATAATACTG]

[-] EMBL CD075102             [TCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTTTTTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAATCAATTCCCTTTGAAAGACCATTTAACCCACACTTAAGAGAACCAAATGAATTTTTTGAACAACAGTCACCTTCATCACTACTATTTCCCTCCCCATCACGTCCGCCTCACATTACATCAGAAAACATTCCTTCCTCTGTACCGGTAACAACTTATTGTATGACACCATGAACCTTGGAGCCCAGTGATGTTTATTTTTTTAATGACTATTTTCAGGTTAACAAACAAGACATTGGGCTTTTATTTTACTTTTTTCTCGAATTTTTTTTTTTCCCTTATACTTCTTTCCCCTTGTATACGTTTAAGTTTAAATAACATTAAACATAATACTG]




>consensus_655#1
TCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAAC
TTTTTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAATCAATTCCCTTTGAA
AGACCATTTAACCCACACTTAAGAGAACCAAATGAATTTTTTGAACAACAGTCACCTTCA
TCACTACTATTTCCCTCCCCATCACGTCCGCCTCACATTACATCAGAAAACATTCCTTCC
TCTGTACCGGTAACAACTTATTGTATGACACCATGAACCTTGGAGCCCAGTGATGTTTAT
TTTTTTAATGACTATTTTCAGGTTAACAAACAAGACATTGGGCTTTTATTTTACTTTTTT
CTCGAATTTTTTTTTTTCCCTTATACTTCTTTCCCCTTGTATACGTTTAAGTTTAAATAA
CATTAAACATAATACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_655#0      GAGGTTCAAATCCATTAAATTTTTATGAAGAGAATGTTTCTAACTTACCTACTCAATATT 60
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      ATGATGATACACTTGGTTGCCAACTTCGTCATCATCAACAACATCATAATCCCAATCTGG 120
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      CTTCACAATTTTATAGTACAGACATTCATCATTTGCTACGATCAGAAGATAATCGCGGTA 180
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      ACTGCGGTAAATATCTAAACAGTGCTTTATCCACATCACCTTCAGGTTATAAACCGAGTG 240
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      GAATTTTCAACCGAATAAACATCGATAAGGTACAACAATATTCACAGCCTCCTATACTAA 300
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      TTCCCCAAAGTCATCCTGAATACCGAAGGAAATCTCAGATTCATAATCAAACTATAAGTA 360
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      CAATATCAACACAATTAGAGCCGTGGTATGCCTCAGCTGCTATCGGTTTGCCGAACAGTA 420
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      GTAGTAATAGTAATAGCAATCGTCGATTAATGTCGGATTATGGTACATCACCAATAGATA 480
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      TGACGAATACACATCAATATCGTCATGAACATGTTGTCAGTCGTGATGAAAACAATGATA 540
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      ACAACCATGAGGAAAGCTTTCGATTCCCGCCTAAAATGCCAATCCTATCTGAAAGGCATA 600
consensus_655#1      ------------------------------------------------------------
                                                                                 

consensus_655#0      AATTATATGACGTCAACTCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACC 660
consensus_655#1      -----------------TCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACC 43
                                      *******************************************

consensus_655#0      ATTCCTATAGCTCTAACTNTNTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTG 720
consensus_655#1      ATTCCTATAGCTCTAACTTTTTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTG 103
                     ****************** * ***************************************

consensus_655#0      AAATCATTCCCTTCGAAAGACCATCTA--CCACACTTAAGAGAACCAA-TGAATNNTT-G 776
consensus_655#1      AATCAATTCCCTTTGAAAGACCATTTAACCCACACTTAAGAGAACCAAATGAATTTTTTG 163
                     **   ******** ********** **  ******************* *****  ** *

consensus_655#0      AACA-CAGTCACCT-CAT-ACTACNTATTCCTNCCANA---CGTNNCGCT-ACATTA-AT 828
consensus_655#1      AACAACAGTCACCTTCATCACTACTATTTCCCTCCCCATCACGTCCGCCTCACATTACAT 223
                     **** ********* *** *****   ****  **  *   ***    ** ****** **

consensus_655#0      CAGAAA-CATTNCTTC-TCTGTACCNNGTACA--CTAT-GNATGACAC-ATGAACCTNG- 881
consensus_655#1      CAGAAAACATTCCTTCCTCTGTACCGGTAACAACTTATTGTATGACACCATGAACCTTGG 283
                     ****** **** **** ********    ***   *** * ******* ******** * 

consensus_655#0      AGCACANNGATGTN-ATTTTTCTA-TGACTATTT-CAGGT-AACAAC--AGAANNTGGNC 935
consensus_655#1      AGCCCAGTGATGTTTATTTTTTTAATGACTATTTTCAGGTTAACAAACAAGACATTGGGC 343
                     *** **  *****  ****** ** ********* ***** *****   ***   *** *

consensus_655#0      CTTTATTAC---TTTTTCTCGAATTTNCTCT---CCNTTA-ACTCNTTNACCNTGNTACG 988
consensus_655#1      TTTTATTTTACTTTTTTCTCGAATTTTTTTTTTTCCCTTATACTTCTTTCCCCTTGTATA 403
                      ******     **************  * *   ** *** ***  **  ** *  **  

consensus_655#0      ----TNAANNTAAA--ACATAAAACATAA----- 1011
consensus_655#1      CGTTTAAGTTTAAATAACATTAAACATAATACTG 437
                         * *   ****  **** ********