These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 719 fasta sequence [CGAGCCCGGTACCCTGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAATCCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGATGAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGTGGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTACCAGCTGATGAAAGTGATAAACCAATTTGGTCTAAACATCCTGTACCTGTATATGATATAAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGGAATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGTGGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAATCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGGTTTACGTAAATCGATTATTCAAGATCATATANCGTGGTCGTTGTATTATCGTTGTTAGTG] [+] EMBL CD067862 [CGAGCCCGGTACCCTGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAATCCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGATGAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGTGGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTACCAGCTGATGAAAGTGATAAACCAATTTGGTCTAAACATCCTGTACCTGTATATGATATAAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGGAATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGTGGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAATCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGGTTTACGTAAATCGATTATTCAAGATCATATANCGTGGTCGTTGTATTATCGTTGTTAGTG] [+] EMBL CD067839 [ TGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAATCCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGATGAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGTGGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTACCAGCTGATGAAAGTGATAAACCAATTTGGTCTAAACATCCTGTACCTGTATATGATATAAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGGAATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGTGGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAATCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGGTTTACGTANATCGATTATTCAAGATCATAT ] consensusID : consensus_6572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [AATCACCTAAGAAAGGTCGTTGCCTTGTAACAATATGGCCTAAAGAAGATCATTTATTGGATGAATCACCACAAATATATTCATCGGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCAGAGTTTGAAACCAGAGGATATACTTCCAGTTGATGCAACAGATGATAAAGTGATAATTGACATAAGTCCTATGGATAAAGATAAACAACAAATTAGTTTAACTATAAATGATGCTAAAACGGATGAGATACGTGCTGTTGCTAAATTGGCATCAACGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCCTATATAAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAGGGTAGTCTCATTATAACTAATCCACATTATACACCAATTCGACTAGGATTAATT] [-] EMBL AI977244 [AATCACCTAAGAAAGGTCGTTGCCTTGTAACAATATGGCCTAAAGAAGATCATTTATTGGATGAATCACCACAAATATATTCATCGGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCAGAGTTTGAAACCAGAGGATATACTTCCAGTTGATGCAACAGATGATAAAGTGATAATTGACATAAGTCCTATGGATAAAGATAAACAACAAATTAGTTTAACTATAAATGATGCTAAAACGGATGAGATACGTGCTGTTGCTAAATTGGCATCAACGGATTCACCATTAGATGATACAACAAATCCACAATTAATTCGCTATTCATATGATTTAGCCTATATAAGTGGTTTACCAGCACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAGGGTAGTCTCATTATAACTAATCCACATTATACACCAATTCGACTAGGATTAATT] [+] EMBL CD201516 [ CACCTAAGAAAGGTCGTTGCCTTGTAACAATATGGCCTAAACAAGATCATTTATTGAATGAATCACCACAAACATATTCATCGGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6572#0 CGAGCCCGGTACCCTGGCTTCCACATCATCTCGGATTCACCATTAGATGATACAACAAAT 60 consensus_6572#1 ------------------------------------------------------------ consensus_6572#0 CCACAATTAATTCGCTATTCATATGATTTAGCTTATATTAGTGGTTTACCAGCACATACT 120 consensus_6572#1 ------------------------------------------------------------ consensus_6572#0 GGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAAGGTAGTCTCATTATAACTAAT 180 consensus_6572#1 -----------------------AATCACC--TAAGAAAGGTCGTTGCCTTGTAAC-AAT 34 * *** *** ***** ** * ** **** *** consensus_6572#0 CCACATTATACAACTAAACCATTGAAAATACGATTTAATGCCATTGTCAAAGAAATAGAT 240 consensus_6572#1 ATGGCCTAAAGA---AGATCATTTATTGGATGAATCACCACAAATAT------ATTCATC 85 ** * * * * **** * * ** * * * * * * * * consensus_6572#0 GAATCTAGTAATAAGGAGGAAGAAGAAGAAGAACAAGAACGAGGTGAAGTAGATGTCAGT 300 consensus_6572#1 GGATTTATTCTTTACTAATATACAACCATTGAGTACAGTTCA---GAGTTTGAAACCAGA 142 * ** ** * * * * * * ** * * ** * ** *** consensus_6572#0 GGAAAGAAATCTAGTCCATTGAAAAGATATCAATCCGATTATTATCCTATTATGATTGTA 360 consensus_6572#1 GGATATACTTCCAGTTGATGCAACAGATGATAAAGTGATAATTGACATA----AGTCCTA 198 *** * * ** *** ** ** **** ** *** *** * ** * ** consensus_6572#0 CCAGCTGATGAAAGTGATAAACCAATTTGGTC-TAAACATCCTGTACCTGTATATGATAT 419 consensus_6572#1 TGGATAAAGATAAACAACAAATTAGTTTAACTATAAATGATGCTAAAACGGATGAGATAC 258 * ** * *** * *** **** * * ** **** consensus_6572#0 AAGCGGTCGATCAATCAAGGTACAAATTGATGGACTTGACAATGATGGCAATGCAGCTGG 479 consensus_6572#1 GTGCTGTTGCTAAATTGG------CATCAACGGATTCACCATTA--GATGATACAAC--- 307 ** ** * * *** ** * *** * ** * * ** ** * consensus_6572#0 AATACCTGGAGAAGATTTAAAATTAACATGTTTAGTGTTAGATAATTTTGACTTAGAAGT 539 consensus_6572#1 -AAATCCACAATTAATTCGCTATTCATATGATTTAGCCTATATAAG--TGGTTTACCAGC 364 * * * * *** *** * *** ** ** **** ** *** ** consensus_6572#0 GGATCTAAAGAGTTCTAGTTATACATGGCAATTTATAGATCATCTAAGTAATCCAATTAA 599 consensus_6572#1 ACATACTGGTGAATTAGGTGAATCATTTATATTCAATAGTAAAGAGGGTAGTCTCATTAT 424 ** * ** * *** *** * * * *** ** **** consensus_6572#0 TCCTAGTCGAATTGGTGAATATGTGGAAATTCAAGATGGACGTCATCTTAATATAAAAGG 659 consensus_6572#1 AACTAATCCAC------ATTATACACCAATTCGACTAGGAT-TAATT------------- 464 *** ** * * *** ***** * *** * ** consensus_6572#0 TTTACGTAAATCGATTATTCAAGATCATATANCGTGGTCGTTGTATTATCGTTGTTAGTG 719 consensus_6572#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||