cluster # 6579

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Schistosoma mansoni
cluster # 6579 cluster # 6579 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6579#0 length = 976 sequences # 3

consensus_6579#1 length = 117 sequences # 1

consensusID : consensus_6579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 976
fasta sequence

                              [GGATGCACCCAACGTGGTCTCGACAGCTCCTAAATAGGAAGCCAACATGTTATTCTATCGGTGAAGACCTGTGCACTAAAAGATTAGTGGTTGGCATCCCTGAGTCCTATTTCTATAATGATGGTGTATTTTGTATGGAAGAGGATATTAGCTCTCCTGTTAAATTCGGGCTTACAGTTGCCCCAATACATGAAACAAATACGTTATGTAGAGTGTGTACGGATATCATATGTGTATTGCTTAACCAGTCTTTTATTCTGGATATTGATTTGGATACTTTTTCCACTCAAAACCCACTTTCTAATAAGTTTACAGAGGAACAATTTGAAATTATTGATCGCTTGTATGCTCCACCTCCACCGCTTACTTTGTGTTTGTCTCCGAAAGATTTGGAAGATCCAGCTGTTATTGTTGCTCATGGTATGAGCAGTGCTCATGTTCTAAATGCTGCTCGAAAACGTCAACTAACACGTCTTTCTCAATGGATNTCTTTCTGGGATCGTGGGACAATTCCATCAACTGAGAGTCTTCGTCTATTTCCTTATGAATTAATGGAGTTCTCTCGATTAATCCTGTCTCTAACTGAACAGAAATTTAGTTCTACTGTCTTAAGAGCAGTTAAAAAAACTCTAGATTTAGCTTACAAACAAACTACTCATAACAAAAATCCGCCATTGATTTCACTCGGTTCCGATGATGAAACCATTCAAAATGCTTTAAGAGAATTAAATAAGGATTCTGATTCCAACTTGACCAGCAGCTTACTTTTGGACCAAAACACTTCGGAAAGTAAAGATTCTTCATTCGCGTCAGATTACACTAGCTTTATACCAATGAAACGTCGTTCAAGTAGTCCTGGCAGTGTATATACAGATTCGAAATCGAAATTGCGTTCATCCGAACCGTTTGTAACATTTAATAATACGAGTCCGGCTGAAGTTGATGAAAATTGTCACTCGTCAAACACTTCACAGTA]

[-] EMBL CD156024             [GGATGCACCCAACGTGGTCTCGACAGCTCCTAAATAGGAAGCCAACATGTTATTCTATCGGTGAAGACCTGTGCACTAAAAGATTAGTGGTTGGCATCCCTGAGTCCTATTTCTATAATGATGGTGTATTTTGTATGGAAGAGGATATTAGCTCTCCTGTTAAATTCGGGCTTACAGTTGCCCCAATACATGAAACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AI975800             [                                               TGTTATTCTATCGGTGAAGACCTGTGCACTAAAAGATTAGTGGTTGGCATCCCTGAGTCCTATTTCTATAATGATGGTGTATTTTGTATGGAAGAGGATATTAGCTCTCCTGTTAAATTCGGGCTTACAGTTGCCCCAATACATGAAACAAATACGTTATGTAGAGTGTGTACGGATATCATATGTGTATTGCTTAACCAGTCTTTTATTCTGGATATTGATTTGGATACTTTTTCCACTCAAAACCCACTTTCTAATAAGTTTACAGAGGAACAATTTGAAATTATTGATCGCTTGTATGCTCCACCTCCACCGCTTACTTTGTGTTTGTCTCCGAAAGATTTGGAAGATCCAGCTGTTATTGTTGCTCATGGTATGAGCAGTGCTCATGTTCTAAATGCTGCTCGAAAACGTCAACTAACACGTCTTTCTCAATGGATNTCTTTCTGGGATCGTGGGACAATTCCATCAACTGAGAGTCTTCGTCTATTTCCTTATGAATTAATGGAGTTCTCTCGATTAATCCTGTCTC                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD156034             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ttTTCTTCTATTTCCTTATGAATTAATGGAGTTCTCTCGATTAATCCTGTCTCTAACTGAACAGAAATTTAGTTCTACTGTCTTAAGAGCAGTTAAAAAAACTCTAGATTTAGCTTACAAACAAACTACTCATAACAAAAATCCGCCATTGATTTCACTCGGTTCCGATGATGAAACCATTCAAAATGCTTTAAGAGAATTAAATAAGGATTCTGATTCCAACTTGACCAGCAGCTTACTTTTGGACCAAAACACTTCGGAAAGTAAAGATTCTTCATTCGCGTCAGATTACACTAGCTTTATACCAATGAAACGTCGTTCAAGTAGTCCTGGCAGTGTATATACAGATTCGAAATCGAAATTGCGTTCATCCGAACCGTTTGTAACATTTAATAATACGAGTCCGGCTGAAGTTGATGAAAATTGTCACTCGTCAAACACTTCACAGTA]




>consensus_6579#0
GGATGCACCCAACGTGGTCTCGACAGCTCCTAAATAGGAAGCCAACATGTTATTCTATCG
GTGAAGACCTGTGCACTAAAAGATTAGTGGTTGGCATCCCTGAGTCCTATTTCTATAATG
ATGGTGTATTTTGTATGGAAGAGGATATTAGCTCTCCTGTTAAATTCGGGCTTACAGTTG
CCCCAATACATGAAACAAATACGTTATGTAGAGTGTGTACGGATATCATATGTGTATTGC
TTAACCAGTCTTTTATTCTGGATATTGATTTGGATACTTTTTCCACTCAAAACCCACTTT
CTAATAAGTTTACAGAGGAACAATTTGAAATTATTGATCGCTTGTATGCTCCACCTCCAC
CGCTTACTTTGTGTTTGTCTCCGAAAGATTTGGAAGATCCAGCTGTTATTGTTGCTCATG
GTATGAGCAGTGCTCATGTTCTAAATGCTGCTCGAAAACGTCAACTAACACGTCTTTCTC
AATGGATNTCTTTCTGGGATCGTGGGACAATTCCATCAACTGAGAGTCTTCGTCTATTTC
CTTATGAATTAATGGAGTTCTCTCGATTAATCCTGTCTCTAACTGAACAGAAATTTAGTT
CTACTGTCTTAAGAGCAGTTAAAAAAACTCTAGATTTAGCTTACAAACAAACTACTCATA
ACAAAAATCCGCCATTGATTTCACTCGGTTCCGATGATGAAACCATTCAAAATGCTTTAA
GAGAATTAAATAAGGATTCTGATTCCAACTTGACCAGCAGCTTACTTTTGGACCAAAACA
CTTCGGAAAGTAAAGATTCTTCATTCGCGTCAGATTACACTAGCTTTATACCAATGAAAC
GTCGTTCAAGTAGTCCTGGCAGTGTATATACAGATTCGAAATCGAAATTGCGTTCATCCG
AACCGTTTGTAACATTTAATAATACGAGTCCGGCTGAAGTTGATGAAAATTGTCACTCGT
CAAACACTTCACAGTA

consensusID : consensus_6579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [CCCTCGTCGTACTGCTCTTAGACGTAGAACTAAATTTCTGTTCAGTTAGAGACAGGATTAATCGAGAGAACTCCATTAATTCATAAGGAAATAGAAAAAATATCATTCTGGGTCATT]

[+] EMBL CD068226             [CCCTCGTCGTACTGCTCTTAGACGTAGAACTAAATTTCTGTTCAGTTAGAGACAGGATTAATCGAGAGAACTCCATTAATTCATAAGGAAATAGAAAAAATATCATTCTGGGTCATT]




>consensus_6579#1
CCCTCGTCGTACTGCTCTTAGACGTAGAACTAAATTTCTGTTCAGTTAGAGACAGGATTA
ATCGAGAGAACTCCATTAATTCATAAGGAAATAGAAAAAATATCATTCTGGGTCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6579#0      GGATGCACCCAACGTGGTCTCGACAGCTCCTAAATAGGAAGCCAACATGTTATTCTATCG 60
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      GTGAAGACCTGTGCACTAAAAGATTAGTGGTTGGCATCCCTGAGTCCTATTTCTATAATG 120
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      ATGGTGTATTTTGTATGGAAGAGGATATTAGCTCTCCTGTTAAATTCGGGCTTACAGTTG 180
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      CCCCAATACATGAAACAAATACGTTATGTAGAGTGTGTACGGATATCATATGTGTATTGC 240
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      TTAACCAGTCTTTTATTCTGGATATTGATTTGGATACTTTTTCCACTCAAAACCCACTTT 300
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      CTAATAAGTTTACAGAGGAACAATTTGAAATTATTGATCGCTTGTATGCTCCACCTCCAC 360
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      CGCTTACTTTGTGTTTGTCTCCGAAAGATTTGGAAGATCCAGCTGTTATTGTTGCTCATG 420
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      GTATGAGCAGTGCTCATGTTCTAAATGCTGCTCGAAAACGTCAACTAACACGTCTTTCTC 480
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      AATGGATNTCTTTCTGGGATCGTGGGACAATTCCATCAACTGAGAGTCTTCGTCTATTTC 540
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      CTTATGAATTAATGGAGTTCTCTCGATTAATCCTGTCTCTAACTGAACAGAAATTTAGTT 600
consensus_6579#1      ----------------------------------------------------CCCTCGTC 8
                                                                             * ** 

consensus_6579#0      CTACTGTCTTAAGAGCAGTTAAAAAAACTCTAGATTTAGCTTACAAACAAACTACTCATA 660
consensus_6579#1      GTACTGCTCTTAGAC--GTAGAACTAAATTTCTGTTCAG-TTAGAGACAGG--ATTAAT- 62
                       *****   * ***   **  **  ** * *   ** ** *** * ***    * * ** 

consensus_6579#0      ACAAAAATCCGCCATTGATTTCACTCGGTTCCGATGATGAAACCATTCAAAATGCTTTAA 720
consensus_6579#1      -CGAGAGAACTCCATTAATT-CATAAGGAAATAGAAAAAATATCATTCTGGGTCATT--- 117
                       * * *   * ***** *** **   **        *  * * *****    *  **   

consensus_6579#0      GAGAATTAAATAAGGATTCTGATTCCAACTTGACCAGCAGCTTACTTTTGGACCAAAACA 780
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      CTTCGGAAAGTAAAGATTCTTCATTCGCGTCAGATTACACTAGCTTTATACCAATGAAAC 840
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      GTCGTTCAAGTAGTCCTGGCAGTGTATATACAGATTCGAAATCGAAATTGCGTTCATCCG 900
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      AACCGTTTGTAACATTTAATAATACGAGTCCGGCTGAAGTTGATGAAAATTGTCACTCGT 960
consensus_6579#1      ------------------------------------------------------------
                                                                                  

consensus_6579#0      CAAACACTTCACAGTA 976
consensus_6579#1      ----------------