cluster # 6616

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6616 cluster # 6616 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6616#0 length = 575 sequences # 3

consensus_6616#1 length = 148 sequences # 1

consensusID : consensus_6616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 575
fasta sequence

                              [GAAGTCAGCAGTTTCATCTGATTTACGTAAAACCATAAGCGTCACTCGCTCACTCTTTTCCCTGGGGTGGATGATTCTATGTCGTA-AC-GGAAGAGCCCTGTTTGGTCCGTAATATGGATTATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTCCAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAATTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAAATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACAAAGCAGTTTAAAGATTCCACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAACGCTTAGTTCAAGAACTCACTGCACACGATATTGATGTCCACAATGTCATTGTNAATCAACTGTTGTTTCCGAATTTATTATCATCATGTGATGCCTCATCTAAAGATCACTCAAATGAACCTCCATCTACTTGTCGGATGTGCTTGGCACGTCAT]

[+] EMBL CD059522             [GAAGTCAGCAGTTTCATCTGATTTACGTAAAACCATAAGCGTCACTCGCTCACTCTTTTCCCTGGGGTGGATGATTCTATGTCGTA ACTGGAAGAGCCCTGTTTGGTCCGTAATATGGATTATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTCCAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAATTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAA                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD154347             [                                                                            aTATGTCGTATAC AGAGGTGTTTCGTTTGGTCCGTAATATGGATTATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTCCAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAATTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAAATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACAAAGCAGTTTAAAGATTCCACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAACGCTTAGTTCAAGAACTCACTGCA                                                                                                                                    ]
[+] EMBL CD110749             [                                                                                                                                                                                                                                                        ATCAGTTAATGGGCCTAGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAAATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACAAAGCAGTTTAAAGATTCCACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAACGCTTAGTTCAAGAACTCACTGCACACGATATTGATGTCCACAATGTCATTGTNAATCAACTGTTGTTTCCGAATTTATTATCATCATGTGATGCCTCATCTAAAGATCACTCAAATGAACCTCCATCTACTTGTCGGATGTGCTTGGCACGTCAT]




>consensus_6616#0
GAAGTCAGCAGTTTCATCTGATTTACGTAAAACCATAAGCGTCACTCGCTCACTCTTTTC
CCTGGGGTGGATGATTCTATGTCGTAACGGAAGAGCCCTGTTTGGTCCGTAATATGGATT
ATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTC
CAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAA
TTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAA
ATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACAAAGCAGTTTAAAGATTCCA
CTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAAC
GCTTAGTTCAAGAACTCACTGCACACGATATTGATGTCCACAATGTCATTGTNAATCAAC
TGTTGTTTCCGAATTTATTATCATCATGTGATGCCTCATCTAAAGATCACTCAAATGAAC
CTCCATCTACTTGTCGGATGTGCTTGGCACGTCAT

consensusID : consensus_6616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [CCAAGCACATCCGACAAGTAGATGGAGGTTCATTTGAGCTGCATCTTTAGATGAGGCATCACATGATGATAATAAATCGGAACACAGTGATTACATGCATGTGCATCATATCGGTGCAGTGGTCTGAGCTAGGCTCGTTGCTACATAC]

[+] EMBL SMAA69263            [CCAAGCACATCCGACAAGTAGATGGAGGTTCATTTGAGCTGCATCTTTAGATGAGGCATCACATGATGATAATAAATCGGAACACAGTGATTACATGCATGTGCATCATATCGGTGCAGTGGTCTGAGCTAGGCTCGTTGCTACATAC]




>consensus_6616#1
CCAAGCACATCCGACAAGTAGATGGAGGTTCATTTGAGCTGCATCTTTAGATGAGGCATC
ACATGATGATAATAAATCGGAACACAGTGATTACATGCATGTGCATCATATCGGTGCAGT
GGTCTGAGCTAGGCTCGTTGCTACATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6616#0      GAAGTCAGCAGTTTCATCTGATTTACGTAAAACCATAAGCGTCACTCGCTCACTCTTTTC 60
consensus_6616#1      ------------------------------------------------------------
                                                                                  

consensus_6616#0      CCTGGGGTGGATGATTCTATGTCGTAACGGAAGAGCCCTGTTTGGTCCGTAATATGGATT 120
consensus_6616#1      ------------------------------------------------------------
                                                                                  

consensus_6616#0      ATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTC 180
consensus_6616#1      ------------------------------------------------------------
                                                                                  

consensus_6616#0      CAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAA 240
consensus_6616#1      ------------------------------------------------------------
                                                                                  

consensus_6616#0      TTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAA 300
consensus_6616#1      ------------------------------------------------------------
                                                                                  

consensus_6616#0      ATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACA-AAGCAGTTTAAAGATTCC 359
consensus_6616#1      ---------------------------CCAAGCACATCCGACAAGTAGATGGAGG--TTC 31
                                                   **  * **   * *** ** *  * *  * *

consensus_6616#0      ACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAA 419
consensus_6616#1      ATTTGAGCTGCATCTTTAGATGAG-GCATCACATGATGATAATAAAT---CGGAACACAG 87
                      * *    ** *** * *   **   ****  **  **  * *   **   ** ***  * 

consensus_6616#0      CGCTTAGTTCAAGAACTCACTGCACACGATATTGATGTCCACAATGTCATTGTNAATCAA 479
consensus_6616#1      TGATTA---CATGCA-----TGTGCATCATATCGGTG-CAGTGGTCTGAGC-TAGGCTCG 137
                       * ***   ** * *     **  **  **** * ** *     * * *   *       

consensus_6616#0      CTGTTGTTTCCGAATTTATTATCATCATGTGATGCCTCATCTAAAGATCACTCAAATGAA 539
consensus_6616#1      TTGCTACATAC------------------------------------------------- 148
                       ** *   * *                                                 

consensus_6616#0      CCTCCATCTACTTGTCGGATGTGCTTGGCACGTCAT 575
consensus_6616#1      ------------------------------------