cluster # 6646

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Schistosoma mansoni
cluster # 6646 cluster # 6646 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6646#0 length = 687 sequences # 3

consensus_6646#1 length = 599 sequences # 1

consensusID : consensus_6646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 687
fasta sequence

                              [CCTCCGAGCCAATAATTCGGCACGAGGGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTCATTGGATATCAGCACCGGTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAGAGAACGAAGTTTGTTTATTGGTTAGCCAAGTACAAGGTAGAGACTTTATCACTTCAGCCCAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTTGAAGATAACCTAACTGCTACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATTCATCCCAGATATGAAGATCATAATATATATTTTTTGGAACTGATGCATTAAAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGT-AAATGAACTTAATAT-ATCTTT]

[+] EMBL CD082825             [CCTCCGAGCCAATAATTCGGCACGAGGGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTCATTGGATATCAGCACCGGTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAGAGAACGAAGTTTGTTTATTGGTTAGCCAAGTACAAGGTAGAGACTTTATCACTTCAGCACAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCACCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTCGAAGATAACCTAACTGCTACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATTCATCACAGATATGAAGATCATTATATATATTTTTTGGAACTGATGCATTAAAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGT AAATGAACTTAATAT ATCTT ]
[-] EMBL CD076413             [                                                                                                                                                                                                                                  GGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTCATTGGATATCAGCACCGGTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAGAGAACGAAGTTTGTTTATTGGTTAGCCAAGTACAAGGTAGAGACTTTATCACTTCAGCCCAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTTGAAGATAACCTAACTGCTACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATTCATCCCAGATATGAAGATCATAATATATATTTTTTGGAACTGATGCATTAAAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGTAAAATGAACTTAATATAATCTTT]
[-] EMBL CD073410             [                                                                                                                                                                                                                                                                                                                                                                                                   GACTTTATCACTTCAGCCCAATATGGTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCCCCCCAACCCCCGAATTTTGAAAATAACCTAACTGCTACAGTGAGTGAAGTGGGTATATGGATCCACCAAATAATAGACGACAGCTAGTCAGAATTCATCCCAGATATGAAGATCATAATATATATTTTTTGGGACTGATGCATTAAAAAAGACTA                                                ]




>consensus_6646#0
CCTCCGAGCCAATAATTCGGCACGAGGGGTAATTCTGATGAAACGATGTATCCCAATATT
TTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCA
CTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGG
TATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTC
ATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTCATTGGATATCAGCACCGGTG
GCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAGAGAACGAAGTTTGT
TTATTGGTTAGCCAAGTACAAGGTAGAGACTTTATCACTTCAGCCCAATATGCTCCGAAA
TGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCTCATTTAATGAGATTGGT
AACCCACCCAAACCGCCGAATTTTGAAGATAACCTAACTGCTACAGTGAGTGAAGTGCGT
ATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATTCATCCCAGATATGAAGATC
ATAATATATATTTTTTGGAACTGATGCATTAAAAAAGACTATGCTTAATGGTTTCTTCTT
TTAAGTAAATGAACTTAATATATCTTT

consensusID : consensus_6646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CGTGAAGTCAGCGAAATTTTGGTCATGAACAAAGACTATGATTGTGAAGATTTGAACTCTAGTCCGGAAATACGAAGAGGTTTATGTAAATATGACAATAATGATTCTCTAATACGAGATGTATATCAGTTTCCCCTTTCTCCAGACATCAAGAACTCTACACTTAATGCCGGTGATGGTGTTAATATCACTGACGTTTCCCAATTGAAGTTTAGTCCTATATGTGAGTTTGAGAGAGATTTTCAAATGCTCAGATTCGCCGTCTTATAATAGTTCACTGGTTGACAATAGTGGTTTTGATCTAGTGGACTCAAGTGATGCTTCCTTCGGTCATCGCTCAAGTTTACTTGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAG]

[+] EMBL CD078956             [CGTGAAGTCAGCGAAATTTTGGTCATGAACAAAGACTATGATTGTGAAGATTTGAACTCTAGTCCGGAAATACGAAGAGGTTTATGTAAATATGACAATAATGATTCTCTAATACGAGATGTATATCAGTTTCCCCTTTCTCCAGACATCAAGAACTCTACACTTAATGCCGGTGATGGTGTTAATATCACTGACGTTTCCCAATTGAAGTTTAGTCCTATATGTGAGTTTGAGAGAGATTTTCAAATGCTCAGATTCGCCGTCTTATAATAGTTCACTGGTTGACAATAGTGGTTTTGATCTAGTGGACTCAAGTGATGCTTCCTTCGGTCATCGCTCAAGTTTACTTGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAG]




>consensus_6646#1
CGTGAAGTCAGCGAAATTTTGGTCATGAACAAAGACTATGATTGTGAAGATTTGAACTCT
AGTCCGGAAATACGAAGAGGTTTATGTAAATATGACAATAATGATTCTCTAATACGAGAT
GTATATCAGTTTCCCCTTTCTCCAGACATCAAGAACTCTACACTTAATGCCGGTGATGGT
GTTAATATCACTGACGTTTCCCAATTGAAGTTTAGTCCTATATGTGAGTTTGAGAGAGAT
TTTCAAATGCTCAGATTCGCCGTCTTATAATAGTTCACTGGTTGACAATAGTGGTTTTGA
TCTAGTGGACTCAAGTGATGCTTCCTTCGGTCATCGCTCAAGTTTACTTGGTAATTCTGA
TGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCA
CATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGA
AAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCT
TCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6646#0      CCTCCGAGCCAATAATTCGGCACGAGGGGTAATTCTGATGAAACGATGTATCCCAATATT 60
consensus_6646#1      -----------------------------------------------------------C 1
                                                                                  

consensus_6646#0      TTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCA 120
consensus_6646#1      GTGAAGTC-AGCGAAATTTTGGTCATGAACAAAGACTATGATTGTGAAGATTTGAACTC- 59
                       **** *  *  * ***    *  **   ** *  * *   *  ****  *    * ** 

consensus_6646#0      CTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGG 180
consensus_6646#1      ------TAGTCCGGAAATA--CGAAGAGGTTTATGTAAATATGACAATAATGA------- 104
                              ***  **** *  * **  *****  ** ** * **  * * ***       

consensus_6646#0      TATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTC 240
consensus_6646#1      ---TTCTCTAATACGAGATGTATATCAGTTTC--CCCTTTCTCCAGACATCAAGAACTCT 159
                         *  *** ****   *     *  *  * *    ***   * *   *  ** ** *  

consensus_6646#0      ATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTC----ATTGGATATCAGCACC 296
consensus_6646#1      ACACTTAATGCCGGTGATGGTGTTAATATCACTGACGTTTCCCAATTGAAGTTTAGTCCT 219
                      *     **   *  *  * * *** **  * **   * *     **** *  * **  * 

consensus_6646#0      G---GTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAG-AGAACG 352
consensus_6646#1      ATATGTGAGTTTGAGAGAGATTTTCAAAT--GCTCAGATTCGCCGTCTTATAATAGTTCA 277
                          ***   ** * *   * *    *    * *** * * *   *  ****  **  * 

consensus_6646#0      AAGTTTGTTTAT--TGGTT--AGCCAAGTACA---AGGTAGAGACTTTATCACT--TCAG 403
consensus_6646#1      CTGGTTGACAATAGTGGTTTTGATCTAGTGGACTCAAGTGATGCTTCCTTCGGTCATCGC 337
                        * ***   **  *****     * ***  *   * **   *  *   **  *  **  

consensus_6646#0      CCCAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCT 463
consensus_6646#1      TCAAGTTTACTTGGTAATTCTG-ATGAAACGA------TGTATCCCAATATTTTGAAATT 390
                       * * * * **  * ***  *  ** ***  *      *    ***   * ** ***  *

consensus_6646#0      CATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTTGAAGATAACCTA--ACTGC 521
consensus_6646#1      GAA--AGGAATACCAGAGATTTCCATAAGCCAC--ATTCCTGAAAGTGAACAATCACTCG 446
                       *   *   * *   *  *    *  ** ** *  * *  ****  * * * *  ***  

consensus_6646#0      TACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATT 581
consensus_6646#1      AACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATT 506
                       ** **     **  *   *  *** *  *   ** *  *   **  *  *  * * ***

consensus_6646#0      CATCCCAGATATGAAGATCA-TAA-TATATATTTTTTG----GAACTGA----TGCATTA 631
consensus_6646#1      CTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGA 566
                      * **  * * *  ** *  * *** *  * ** ** **    * *** *    * *** *

consensus_6646#0      AAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGTAAATGAACTTAATATATCTTT 687
consensus_6646#1      AGAAACACCATAGTTG-CGTTGATGCCCCTCCAG---------------------- 599
                      * *** ** **  **   * *     *  *  **