These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 994 fasta sequence [AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAGTCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACANATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTCCATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATTTANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNAGACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAATANAGAGAGAAAGAGGTGCATGTGTGTGTGTGTGTACGTGTTTGACGAGAAAGGAGACTTNGTTTTACCTATGAACTTATATCATATGACTACCCATTTCGGGATGGATAAGTTGTTTTTCTTTTTCTAAACTGATTCAGCAGTTACTCCTAAAAAAC] [+] EMBL CD079302 [AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAGTCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTACTTATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCANAAAGATCACTCTTCANATGAAATCAATAATGATAATACACANATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTCCATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATTTANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNAGACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAATANAGAGAGAAAGAGGTGCATGTGTGTGTGTGTGTACGTGTTTGACGAGAAAGGAGACTTNGTTTTACCTATGAACTTATATCATATGACTACCCATTTCGGGATGGATAAGTTGTTTTTCTTTTTCTAAACTGATTCAGCAGTTACTCCTAAAAAAC] [+] EMBL AI975495 [ AATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACAAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATATTCGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCACATTTAAAACACCATCATCTT ] [+] EMBL CD077863 [ tgGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGA ] consensusID : consensus_6657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATTTAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAGACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAGAGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTTTGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTAGTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAATATACATTTTCA] [-] EMBL CD073583 [CATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATTTAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAGACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAGAGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTTTGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTAGTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAATATACATTTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6657#0 AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAG 60 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 TCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAAT 120 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 ACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATC 180 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 AACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAA 240 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 TATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGT 300 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 AATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAA 360 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 TGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTAC 420 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 ATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAAT 480 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 ACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATC 540 consensus_6657#1 --------------------------------------CATCACCTTCTCAATATCAATC 22 ********************** consensus_6657#0 AGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACANATGAT 600 consensus_6657#1 AGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGAT 82 *************************** *********************** * ***** consensus_6657#0 AAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTC 660 consensus_6657#1 AAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTC 142 ************************************ ***** **************** consensus_6657#0 CATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATT 720 consensus_6657#1 CATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATT 202 ******** ********************************* ******** *** **** consensus_6657#0 TANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNA 780 consensus_6657#1 TAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAG 262 ** ** ******* ** ******* * * **************************** consensus_6657#0 GACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAA-TAN 839 consensus_6657#1 ACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAG 322 ********* ********* ****** ** *********************** ** consensus_6657#0 AGAGAGAAAGAGG-TGCATGTGTGTGTGTGTGTACGTGTTTG-ACGAGAAAGGAGACTTN 897 consensus_6657#1 AGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTT 382 ************* **************************** **************** consensus_6657#0 -GTTTTA-CCTATGA-ACTTATA--TCAT--ATGAC-TACCCATTTCGGG--ATGGATAA 947 consensus_6657#1 TGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTA 442 ****** ******* ******* *** ***** ********* ** ** *** * consensus_6657#0 GTT-GTTTTTCTTTTTCT-------AAACTGATTC--AGCA-GTTA---CTCCTAAAAAA 993 consensus_6657#1 GTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAA 502 *** ****** ** ** * ** ***** **** **** **** **** consensus_6657#0 C----------- 994 consensus_6657#1 TATACATTTTCA 514 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||