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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 994 fasta sequence
[AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAGTCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACANATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTCCATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATTTANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNAGACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAATANAGAGAGAAAGAGGTGCATGTGTGTGTGTGTGTACGTGTTTGACGAGAAAGGAGACTTNGTTTTACCTATGAACTTATATCATATGACTACCCATTTCGGGATGGATAAGTTGTTTTTCTTTTTCTAAACTGATTCAGCAGTTACTCCTAAAAAAC]
[+] EMBL CD079302 [AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAGTCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTACTTATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCANAAAGATCACTCTTCANATGAAATCAATAATGATAATACACANATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTCCATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATTTANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNAGACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAATANAGAGAGAAAGAGGTGCATGTGTGTGTGTGTGTACGTGTTTGACGAGAAAGGAGACTTNGTTTTACCTATGAACTTATATCATATGACTACCCATTTCGGGATGGATAAGTTGTTTTTCTTTTTCTAAACTGATTCAGCAGTTACTCCTAAAAAAC]
[+] EMBL AI975495 [ AATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACAAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATATTCGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCACATTTAAAACACCATCATCTT ]
[+] EMBL CD077863 [ tgGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGA ]
consensusID : consensus_6657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[CATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATTTAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAGACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAGAGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTTTGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTAGTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAATATACATTTTCA]
[-] EMBL CD073583 [CATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATTTAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAGACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAGAGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTTTGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTAGTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAATATACATTTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6657#0 AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAG 60
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 TCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAAT 120
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 ACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATC 180
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 AACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAA 240
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 TATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGT 300
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 AATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAA 360
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 TGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTAC 420
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 ATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAAT 480
consensus_6657#1 ------------------------------------------------------------
consensus_6657#0 ACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATC 540
consensus_6657#1 --------------------------------------CATCACCTTCTCAATATCAATC 22
**********************
consensus_6657#0 AGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACANATGAT 600
consensus_6657#1 AGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGAT 82
*************************** *********************** * *****
consensus_6657#0 AAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTC 660
consensus_6657#1 AAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTC 142
************************************ ***** ****************
consensus_6657#0 CATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATT 720
consensus_6657#1 CATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATT 202
******** ********************************* ******** *** ****
consensus_6657#0 TANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNA 780
consensus_6657#1 TAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAG 262
** ** ******* ** ******* * * ****************************
consensus_6657#0 GACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAA-TAN 839
consensus_6657#1 ACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAG 322
********* ********* ****** ** *********************** **
consensus_6657#0 AGAGAGAAAGAGG-TGCATGTGTGTGTGTGTGTACGTGTTTG-ACGAGAAAGGAGACTTN 897
consensus_6657#1 AGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTT 382
************* **************************** ****************
consensus_6657#0 -GTTTTA-CCTATGA-ACTTATA--TCAT--ATGAC-TACCCATTTCGGG--ATGGATAA 947
consensus_6657#1 TGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTA 442
****** ******* ******* *** ***** ********* ** ** *** *
consensus_6657#0 GTT-GTTTTTCTTTTTCT-------AAACTGATTC--AGCA-GTTA---CTCCTAAAAAA 993
consensus_6657#1 GTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAA 502
*** ****** ** ** * ** ***** **** **** **** ****
consensus_6657#0 C----------- 994
consensus_6657#1 TATACATTTTCA 514
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||