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Schistosoma mansoni
cluster # 6659 cluster # 6659       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6659#0 length = 1151 sequences # 2  
consensus_6659#1 length = 379 sequences # 2  

consensusID : consensus_6659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1151
fasta sequence
                              [GTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATATGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGTTACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTTTTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTTTCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTCAATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAGGCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAATATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGTAGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTATTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTATTTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTTCGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG]

[+] EMBL CD079362             [GTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATATGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGTTACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTTTTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD073639             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTNTGCTTTTAGTATTAATATATATATATATATATATATATATATNNCAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATAAAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTTTCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTCAATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAGGCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAATATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGTAGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTATTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTATTTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTTCGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG]


>consensus_6659#0 GTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATT CATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGAT ATTTACCATTATTATTATTATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTA ACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGT AATCATTTGTCCCATTTAATTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGT CATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCC CTCTCTGTGCTTTTCCATATGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCA TTTGTTTTCTGTGTATTGTTACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTT TTTCTTTATACCTGTTTTTTTGCTTTTAGTATTAATATATATATATATATATATATATAT ATTACAAGAATGCGTTTGCATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTG TAAAAGACGATAAAATANAATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTC TCACCCTTATTTTGTATTTTCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTT TTATAATTACATTTAATTCAATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTT TTTGTTTAATTAACCCGAGGCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAG CCAACCACAGCTCACAGAATATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATT ATATTTTGTTGTAGTATGTAGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCC TTTGTTTAGTCGATTTTTATTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCT TCTGATCATCATTTCTTATTTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAG TTCGCCCCACTGTCCTCTTCGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATA AACAATTTTTG



consensusID : consensus_6659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 379
fasta sequence
                              [CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCCCCTATACCTCGCTTTACAAC-ATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGG]

[-] EMBL CD141647             [CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTGGTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCCCCTATACCTCGCTTTACAAC ATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAACAAGTAGTAGCCTTGTATGG]
[-] EMBL CD141593             [                                                                                                 TATTCATGATCGGTGTACCTCTTTTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCACCTATGTCTCGCTTTACACCGATGTGGA                                                        ]


>consensus_6659#1 CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTG GTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTT TTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATT ATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTCACTAAATTACCC TTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAATTCTTCCCCCTA TACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAGTTTCTTTATAAC AAGTAGTAGCCTTGTATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6659#0      -----------------------------------------GTCGTACCCGCTAATTCTG 19
consensus_6659#1      CTGGCCTACAANCTGGTATGATAAATACAAATGCACAAAGTGTCGTACCCGCTAATTCTG 60
                                                               *******************

consensus_6659#0      GTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTT 79
consensus_6659#1      GTCTAGGCTTACTGTAGTTTTGATGTCCTGTGGTTAATATTCATGATCGGTGTACCTCTT 120
                      ************************************************************

consensus_6659#0      TTCCAAGAAAAAATATATCTTCCATCACCAGTTCTACTGATATTTACCATTATTATTATT 139
consensus_6659#1      TTCCAAGAAAAAATATATCTTCCATCTCCAGTTCTACTGATATTTACCATTATTATTATT 180
                      ************************** *********************************

consensus_6659#0      ATTATTACTATTATTATTATTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTC 199
consensus_6659#1      ATTATTA------------TTATTATCTCGCCTGTAAATTAACTTGATATCATATGACTC 228
                      *******            *****************************************

consensus_6659#0      ACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAA 259
consensus_6659#1      ACTAAATTACCCTTACAAATATTGCACTCGTAAAGAATTGTAATCATTTGTCCCATTTAA 288
                      ************************************************************

consensus_6659#0      TTCTTCCACCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAG 319
consensus_6659#1      TTCTTCCCCCTATACCTCGCTTTACAACATGTGGAGTTAGTCATCAATCATGATGTTTAG 348
                      ******* ****************************************************

consensus_6659#0      TTTCTTTATAACAAGTAGTAGCCTTGTATGGCTTATCATCCCTCTCTGTGCTTTTCCATA 379
consensus_6659#1      TTTCTTTATAACAAGTAGTAGCCTTGTATGG----------------------------- 379
                      *******************************                             

consensus_6659#0      TGGTAACTAGTATGATAAAGTAGACTAATCATCTGATTTCATTTGTTTTCTGTGTATTGT 439
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TACTAATGTAAATTGTAGGATATGCATTTACATGTTCTGTTTTTCTTTATACCTGTTTTT 499
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TTGCTTTTAGTATTAATATATATATATATATATATATATATATTACAAGAATGCGTTTGC 559
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      ATCTGCCCTCTTCATATTATGTACAAATACACACTTCTTTGTAAAAGACGATAAAATANA 619
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      ATACCATTGCAGTATGAAACTACGGTAGATAACCGGTTTTCTCACCCTTATTTTGTATTT 679
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TCAAAATCGCATACATACTAGAATTTATTCACATTGCTGTTTTATAATTACATTTAATTC 739
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      AATCTATATGTATAGGTTGATATCTGTGTTATTTGAAGGTTTTTGTTTAATTAACCCGAG 799
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      GCAATTATGGAGTGGAATTCTCAGAAATGCAAATAATGGAGCCAACCACAGCTCACAGAA 859
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TATATACTTTTTAATGATCTCTACTTTTGCTTAATAATATTATATTTTGTTGTAGTATGT 919
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      AGTTTTTTTATAAATGCCATCTTCCAGGTTCCAAGTAATCCTTTGTTTAGTCGATTTTTA 979
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TTTTCTTCATCTTCCTCACTTGTTTTATTTTCTTGTTTGCTTCTGATCATCATTTCTTAT 1039
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TTATCGTTTGGTGCTTCCACCAAACAAGAAAGTGTTTACAGTTCGCCCCACTGTCCTCTT 1099
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      CGCAATTGCTTTCAATACATAACCTGACTAGCCGTTAAATAAACAATTTTTG 1151
consensus_6659#1      ----------------------------------------------------
                                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)