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Schistosoma mansoni
cluster # 6667 cluster # 6667       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6667#0 length = 1069 sequences # 2  
 consensus_6667#1 length = 799 sequences # 2  
consensusID : consensus_6667#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1069
fasta sequence 
                              [ATCATTTTTTTTTATTTTTTTTGAGCTTCATGATGAAATATCTATTTTTAAATTTGAATCAAATCTACAGAAGTAGAAGTAAAAATATAATCCGCATTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTAGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTCGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGCTAATGAATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTACTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTCCCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAAAATAATTAAACGAATATACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCTATACATATATTGAATATCTCATTCAAATGATCCTACAATCCTTATATACCTCGATACTCGAAATAAAAACTGGTCACCCGTACTAGTCTATTAAAATACAAAACGCGTTCTCAATGAATTTGACAGTTTGGATTTATTAATTATCAACAGGTTGATGTAAGACAATATGAGCCACATCAATGGTGCGAAAAATGATGGTACTAGCCAATTTACTAAACGCTACGTAAAGTAATACGATCGAAAGCAGTGTGCACAATACTGAAGCATCCTTATTTACATTTAATTATGAAAACAACCTGACCAAATAAAATAACAGGTCTATTTTGTCAGACGCCCCTCGTGCCGAATTTTGGCCTN]

[+] EMBL CD073769             [ATCATTTTTTTTTATTTTTTTTGAGCTTCATGATGAAATATCTATTTTTAAATTTGAATCAAATCTACAGAAGTAGAAGTAAAAATATAATCCGCATTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTAGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTCGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGCTAATGAATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTACTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTCCCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAAAATAATTAAACGAATATACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCTATACATATATTGAATATCTCATTCAAATGA                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD079500             [                                                                                                                                                                                                                                                                                                                                 TTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGCTAATG ATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTACTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTCCCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAAAATAATTAAACGAATATACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCTATACATATATTGAATATCTCATTCAAATGATCCTACAATCCTTATATACCTCGATACTCGAAATAAAAACTGGTCACCCGTACTAGTCTATTAAAATACAAAACGCGTTCTCAATGAATTTGACAGTTTGGATTTATTAATTATCAACAGGTTGATGTAAGACAATATGAGCCACATCAATGGTGCGAAAAATGATGGTACTAGCCAATTTACTAAACGCTACGTAAAGTAATACGATCGAAAGCAGTGTGCACAATACTGAAGCATCCTTATTTACATTTAATTATGAAAACAACCTGACCAAATAAAATAACAGGTCTATTTTGTCAGACGCCCCTCGTGCCGAATTTTGGCCTN]




>consensus_6667#0
ATCATTTTTTTTTATTTTTTTTGAGCTTCATGATGAAATATCTATTTTTAAATTTGAATC
AAATCTACAGAAGTAGAAGTAAAAATATAATCCGCATTAAAGTCGCATTCCTTTTCTGAC
CGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATT
CTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATT
TAGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTCGTAAGTTGTATT
CATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCG
AGCTTCAGGCTAATGAATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTACTG
GTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCT
ATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAGGAT
GTACATTGTAAATTAGAACAGATTTTTTCCCCAATTTTTCTGCATACATAAAGTGAGTAA
TACATTTCCCTAAACTCACGGGAATCGCTACAATTCAAAATAATTAAACGAATATACTAT
TGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCTATACATAT
ATTGAATATCTCATTCAAATGATCCTACAATCCTTATATACCTCGATACTCGAAATAAAA
ACTGGTCACCCGTACTAGTCTATTAAAATACAAAACGCGTTCTCAATGAATTTGACAGTT
TGGATTTATTAATTATCAACAGGTTGATGTAAGACAATATGAGCCACATCAATGGTGCGA
AAAATGATGGTACTAGCCAATTTACTAAACGCTACGTAAAGTAATACGATCGAAAGCAGT
GTGCACAATACTGAAGCATCCTTATTTACATTTAATTATGAAAACAACCTGACCAAATAA
AATAACAGGTCTATTTTGTCAGACGCCCCTCGTGCCGAATTTTGGCCTN

consensusID : consensus_6667#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 799
fasta sequence 
                              [CTCCCTTCCCCAAGTGCACGTATGAGTTCAGTTNATTGTACAATACTCAGCATTTCACGACGTATAATAACTGTAGGTAGCTGTATCGTGTTACGAACTACCANGATCTGTCATATATAGCATCGTGTTAATAATAAAGGAATAGGAAATCCCTGAAGACAGTAATATTACATTGCAGATGGCTGAAAGTAAGCAAACATAAATGAGCTTCATGATGAAATATCTATTGCATAAATTTCAGCCAAATTTACAGAAGTAGAAGTAAAAATATAATCCGCACTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTCGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTGGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCGCGTCCATCAAAGGATGTACATTGTAAATTAGATCAGATTTTTTCGCGCAATTTTTGTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCATTCATCATCATTTAGCTTGGCCTGTGTTTGCAGTATTAATATACAATGGCAAC]

[-] EMBL CD080049             [CTCCCTTCCCCAAGTGCACGTATGAGTTCAGTTNATTGTACAATACTCAGCATTTCACGACGTATAATAACTGTAGGTAGCTGTATCGTGTTACGAACTACCANGATCTGTCATATATAGCATCGTGTTAATAATAAAGGAATAGGAAATCCCTGAAGACAGTAATATTACATTGCAGATGGCTGAAAGTAAGCAAACATAAATGAGCTTCATGATGAAATATCTATTGCATAAATTTCAGCCAAATTTACAGAAGTAGAAGTAAAAATATAATCCGCACTAAAGTCGCATTCCTTTTCTGACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATAATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGGATTTCGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTGGTAAGTTGTATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACATCGAGCTTCAGGTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCGCGTCCATCAAAGGATGTACATTGTAAATTAGATCAGATTTTTTCGCGCAATTTTTGTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCATTCATCATCATTTAGCTTGGCCTGTGTTTGCAGTATTAATATACAATGGCAAC]
[-] EMBL CD192240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACTTCGCGTCCATCAAAGGATGTACATTGTAAATTAGAACAGATTTTTTC CCCAATTTTTCTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCATTCATCATCA                                           ]




>consensus_6667#1
CTCCCTTCCCCAAGTGCACGTATGAGTTCAGTTNATTGTACAATACTCAGCATTTCACGA
CGTATAATAACTGTAGGTAGCTGTATCGTGTTACGAACTACCANGATCTGTCATATATAG
CATCGTGTTAATAATAAAGGAATAGGAAATCCCTGAAGACAGTAATATTACATTGCAGAT
GGCTGAAAGTAAGCAAACATAAATGAGCTTCATGATGAAATATCTATTGCATAAATTTCA
GCCAAATTTACAGAAGTAGAAGTAAAAATATAATCCGCACTAAAGTCGCATTCCTTTTCT
GACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATA
ATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGG
ATTTCGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTGGTAAGTTGT
ATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACA
TCGAGCTTCAGGTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATC
CAACAATGACTTCGCGTCCATCAAAGGATGTACATTGTAAATTAGATCAGATTTTTTCGC
GCAATTTTTGTGCATACATAAAGTGAGTAATACATTTCCCTAAACTCACGGGAATCGCAG
TTAGTCCTTTAATTATCAGTGGTTCATTCATCATCATTTAGCTTGGCCTGTGTTTGCAGT
ATTAATATACAATGGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6667#0      ------------------------------------------------------------
consensus_6667#1      CTCCCTTCCCCAAGTGCACGTATGAGTTCAGTTNATTGTACAATACTCAGCATTTCACGA 60
                                                                                  

consensus_6667#0      ------------------------------------------------------------
consensus_6667#1      CGTATAATAACTGTAGGTAGCTGTATCGTGTTACGAACTACCANGATCTGTCATATATAG 120
                                                                                  

consensus_6667#0      ------------------------------------------------------------
consensus_6667#1      CATCGTGTTAATAATAAAGGAATAGGAAATCCCTGAAGACAGTAATATTACATTGCAGAT 180
                                                                                  

consensus_6667#0      --ATCATTTTTTTTTATTTTTTTTGAGCTTCATGATGAAATATCTATTTT-TAAATTTGA 57
consensus_6667#1      GGCTGAAAGTAAGCAAACATAAATGAGCTTCATGATGAAATATCTATTGCATAAATTTCA 240
                         * *   *     *   *   *************************   ******* *

consensus_6667#0      ATCAAATCTACAGAAGTAGAAGTAAAAATATAATCCGCATTAAAGTCGCATTCCTTTTCT 117
consensus_6667#1      GCCAAATTTACAGAAGTAGAAGTAAAAATATAATCCGCACTAAAGTCGCATTCCTTTTCT 300
                        ***** ******************************* ********************

consensus_6667#0      GACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATA 177
consensus_6667#1      GACCGTGATCCAACCGTCATCATCAGGTTTATTACTGTATTCCATACGTTTCTTGAAATA 360
                      ************************************************************

consensus_6667#0      ATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGG 237
consensus_6667#1      ATTCTGTAGAATTGCTTCCGAATCACTTTTAGACTTTTGATAATCTATTATCCATTCGGG 420
                      ************************************************************

consensus_6667#0      ATTTAGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTCGTAAGTTGT 297
consensus_6667#1      ATTTCGAGTTAAATAGCATTCAGGAATGTTAATATCGGTCAAGTTGAACTGGTAAGTTGT 480
                      **** ********************************************* *********

consensus_6667#0      ATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACA 357
consensus_6667#1      ATTCATTGGAGATACTAGAATTTTTTCTACACATTGTGATTCGTTAAATTCAAAGACACA 540
                      ************************************************************

consensus_6667#0      TCGAGCTTCAGGCTAATGAATTTCCAAAAGTTAATCAGACAAAATAATTGTGAAAGCCTA 417
consensus_6667#1      TCGAGCTTCAGG------------------------------------------------ 552
                      ************                                                

consensus_6667#0      CTGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACT 477
consensus_6667#1      -TGGTGAGTAGCGTAAACTAGTTATTTCACCAAATGATTTAAAGAAATCCAACAATGACT 611
                       ***********************************************************

consensus_6667#0      TCTATAGAGTTAGAAATATATTACAAACAAATTATTGAACAATTACCGCGTCCATCAAAG 537
consensus_6667#1      TC---------------------------------------------GCGTCCATCAAAG 626
                      **                                             *************

consensus_6667#0      GATGTACATTGTAAATTAGAACAGATTTTTTCCC-CAATTTTTCTGCATACATAAAGTGA 596
consensus_6667#1      GATGTACATTGTAAATTAGATCAGATTTTTTCGCGCAATTTTTGTGCATACATAAAGTGA 686
                      ******************** *********** * ******** ****************

consensus_6667#0      GTAATACATTTCCCTAAACTCACGGGAATCGCTACAATTCAA--AATAATTAAACGAATA 654
consensus_6667#1      GTAATACATTTCCCTAAACTCACGGGAATCGCAGTTAGTCCTTTAATTATCAGTGGTTCA 746
                      ********************************    * **    *** ** *   *   *

consensus_6667#0      T--ACTATTGTGCAAAACTGGTTTGTTAGAGGTTAATAAATGATCAGTAGCGACTGGCCT 712
consensus_6667#1      TTCATCATCATTTAGC-TTGGCCTGTGTTTGCAGTATTAATATACAATGGCAAC------ 799
                      *  *  **  *  *    ***  ***    *    ** ***   ** * ** **      

consensus_6667#0      ATACATATATTGAATATCTCATTCAAATGATCCTACAATCCTTATATACCTCGATACTCG 772
consensus_6667#1      ------------------------------------------------------------
                                                                                  

consensus_6667#0      AAATAAAAACTGGTCACCCGTACTAGTCTATTAAAATACAAAACGCGTTCTCAATGAATT 832
consensus_6667#1      ------------------------------------------------------------
                                                                                  

consensus_6667#0      TGACAGTTTGGATTTATTAATTATCAACAGGTTGATGTAAGACAATATGAGCCACATCAA 892
consensus_6667#1      ------------------------------------------------------------
                                                                                  

consensus_6667#0      TGGTGCGAAAAATGATGGTACTAGCCAATTTACTAAACGCTACGTAAAGTAATACGATCG 952
consensus_6667#1      ------------------------------------------------------------
                                                                                  

consensus_6667#0      AAAGCAGTGTGCACAATACTGAAGCATCCTTATTTACATTTAATTATGAAAACAACCTGA 1012
consensus_6667#1      ------------------------------------------------------------
                                                                                  

consensus_6667#0      CCAAATAAAATAACAGGTCTATTTTGTCAGACGCCCCTCGTGCCGAATTTTGGCCTN 1069
consensus_6667#1      ---------------------------------------------------------


Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)