cluster # 6709

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Schistosoma mansoni
cluster # 6709 cluster # 6709 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6709#0 length = 626 sequences # 1
consensus_6709#1 length = 595 sequences # 1

consensus_6709#2 length = 418 sequences # 1
consensus_6709#3 length = 410 sequences # 1

consensusID : consensus_6709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CGTTTGCTACGATTACGATTCGTCGATTTTAACGGTTGGGACGTATTACGTATGCTTCATTACCGCCTACGTCAACGTAGACAACTTTCTACATCGACTTCGTAGTTTACACAACTTTCTATACTCAATTCTCATATTCGAATCCCACAGCACATACATTGGCATAAACAATCCACACGAAACGTTCAAAATCACCTACGAACAAGTGCGTGGTTGCTGAGTTAAATTAAATTATATTGAGCGAACAATTGTTTCCAATAACTTCATCATCAGGCTCTACAGTTATAAGTCCATAATTATCATAATATTTTACAAAGGCCAAAAATGAGTTCCGGGTTACATTCTTTTTAAAAATCTTCCATTTATACTTGGAAAATATTCATCAATAATCATGTTACTACCCAGTATATGTGCATTTGATGGGTTAAATGAACACTATTATTTTTAAAGTTAGTGTTTATATTCGTCAAGAGGTTTATATAAAATTGAGTGAATAAAGCAATCGTCATCCCTGTCTTTAGAAATAGTCGGCGTAGAGTATGAACCGGACCGTAGCTGCTACCTTGACTTAGTGGTCGGACTTGCCTATCATGATTACTCATGCGAACTATATTGTATGAAACACG]

[+] EMBL CD127454             [CGTTTGCTACGATTACGATTCGTCGATTTTAACGGTTGGGACGTATTACGTATGCTTCATTACCGCCTACGTCAACGTAGACAACTTTCTACATCGACTTCGTAGTTTACACAACTTTCTATACTCAATTCTCATATTCGAATCCCACAGCACATACATTGGCATAAACAATCCACACGAAACGTTCAAAATCACCTACGAACAAGTGCGTGGTTGCTGAGTTAAATTAAATTATATTGAGCGAACAATTGTTTCCAATAACTTCATCATCAGGCTCTACAGTTATAAGTCCATAATTATCATAATATTTTACAAAGGCCAAAAATGAGTTCCGGGTTACATTCTTTTTAAAAATCTTCCATTTATACTTGGAAAATATTCATCAATAATCATGTTACTACCCAGTATATGTGCATTTGATGGGTTAAATGAACACTATTATTTTTAAAGTTAGTGTTTATATTCGTCAAGAGGTTTATATAAAATTGAGTGAATAAAGCAATCGTCATCCCTGTCTTTAGAAATAGTCGGCGTAGAGTATGAACCGGACCGTAGCTGCTACCTTGACTTAGTGGTCGGACTTGCCTATCATGATTACTCATGCGAACTATATTGTATGAAACACG]




>consensus_6709#0
CGTTTGCTACGATTACGATTCGTCGATTTTAACGGTTGGGACGTATTACGTATGCTTCAT
TACCGCCTACGTCAACGTAGACAACTTTCTACATCGACTTCGTAGTTTACACAACTTTCT
ATACTCAATTCTCATATTCGAATCCCACAGCACATACATTGGCATAAACAATCCACACGA
AACGTTCAAAATCACCTACGAACAAGTGCGTGGTTGCTGAGTTAAATTAAATTATATTGA
GCGAACAATTGTTTCCAATAACTTCATCATCAGGCTCTACAGTTATAAGTCCATAATTAT
CATAATATTTTACAAAGGCCAAAAATGAGTTCCGGGTTACATTCTTTTTAAAAATCTTCC
ATTTATACTTGGAAAATATTCATCAATAATCATGTTACTACCCAGTATATGTGCATTTGA
TGGGTTAAATGAACACTATTATTTTTAAAGTTAGTGTTTATATTCGTCAAGAGGTTTATA
TAAAATTGAGTGAATAAAGCAATCGTCATCCCTGTCTTTAGAAATAGTCGGCGTAGAGTA
TGAACCGGACCGTAGCTGCTACCTTGACTTAGTGGTCGGACTTGCCTATCATGATTACTC
ATGCGAACTATATTGTATGAAACACG

consensusID : consensus_6709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CCTAAACTGAATATTATAAACCTCTTCCCTCCCTTTTTGATTACCTCTATCTTAATCTTCACATCCATCATTCCCAATTCATAATTACCTTGATAACACCCTTCTTATTACGTATTATATTCACACAACAATCTTATCATTATTACTATTTGTCATTATTATCTCAATTGACAAGATGGAATTCTCCTGCTATGAATTTTATTCATACGATTTTTCGCATTTACATTTTTGCTATATTACTATTGTACTGATTGTGACTGGACACTTTACTGCAAATCATTTTGACCTTTATTAAATGACCTTTCTAATTTATAAATAACACAATTTTGAAGTATAAATGTCGTAACAGATGCAGACATTCACCATTTTTAACATATAACGTCAAATTAATTAATACATTCCTCATTTTGGCCTTTGTAAAATATCATAATTATGGACTTATAACTGTAGAGCCTGATGATGAAGTTATTGAAAACAATTGTTCGCTCAAATATTGCTCATTTTTGAATATTCCATGAGGATCGTTAAACTGCCAAAGATCATGTAGTTTTTTTATTGGTATCTTTAATGCTNTCATTTGTCCGACAATGGAATT]

[+] EMBL CD093132             [CCTAAACTGAATATTATAAACCTCTTCCCTCCCTTTTTGATTACCTCTATCTTAATCTTCACATCCATCATTCCCAATTCATAATTACCTTGATAACACCCTTCTTATTACGTATTATATTCACACAACAATCTTATCATTATTACTATTTGTCATTATTATCTCAATTGACAAGATGGAATTCTCCTGCTATGAATTTTATTCATACGATTTTTCGCATTTACATTTTTGCTATATTACTATTGTACTGATTGTGACTGGACACTTTACTGCAAATCATTTTGACCTTTATTAAATGACCTTTCTAATTTATAAATAACACAATTTTGAAGTATAAATGTCGTAACAGATGCAGACATTCACCATTTTTAACATATAACGTCAAATTAATTAATACATTCCTCATTTTGGCCTTTGTAAAATATCATAATTATGGACTTATAACTGTAGAGCCTGATGATGAAGTTATTGAAAACAATTGTTCGCTCAAATATTGCTCATTTTTGAATATTCCATGAGGATCGTTAAACTGCCAAAGATCATGTAGTTTTTTTATTGGTATCTTTAATGCTNTCATTTGTCCGACAATGGAATT]




>consensus_6709#1
CCTAAACTGAATATTATAAACCTCTTCCCTCCCTTTTTGATTACCTCTATCTTAATCTTC
ACATCCATCATTCCCAATTCATAATTACCTTGATAACACCCTTCTTATTACGTATTATAT
TCACACAACAATCTTATCATTATTACTATTTGTCATTATTATCTCAATTGACAAGATGGA
ATTCTCCTGCTATGAATTTTATTCATACGATTTTTCGCATTTACATTTTTGCTATATTAC
TATTGTACTGATTGTGACTGGACACTTTACTGCAAATCATTTTGACCTTTATTAAATGAC
CTTTCTAATTTATAAATAACACAATTTTGAAGTATAAATGTCGTAACAGATGCAGACATT
CACCATTTTTAACATATAACGTCAAATTAATTAATACATTCCTCATTTTGGCCTTTGTAA
AATATCATAATTATGGACTTATAACTGTAGAGCCTGATGATGAAGTTATTGAAAACAATT
GTTCGCTCAAATATTGCTCATTTTTGAATATTCCATGAGGATCGTTAAACTGCCAAAGAT
CATGTAGTTTTTTTATTGGTATCTTTAATGCTNTCATTTGTCCGACAATGGAATT

consensusID : consensus_6709#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [ATACTTTTACTATGGCTTCATAATAATAACATACCACTTAACAATTTATACAGTTTCATAAATTTACCCTTAAAGGATCTTTGTTTCATTATCAACGGGTTATTGATTGTAGTAGTATATCAAAGTTGAATAAATCAATTCATTTTTTCCTTTTTCAGTTGTATTGCAAAATTGTCCAGGAATATATGGGAAATAAGGGATTTGTTTTTTCAATTCACACATAAATTCGTTCGGAAACCTTGGCTTAAAAATAAGTTGGGACTGAATTTATTTTTTTTTAAAATTATTAAAATGGAGTTTAAAAAATCCCCATAAATAATTCAAAAATGAACAATTTTTGAGCGAACAATTGTTTTAAATAACTTCATCATCAGGCTCTACAGTTATAAGCCCATAATTATTGGGATATTTTACAAAG]

[+] EMBL CD074356             [ATACTTTTACTATGGCTTCATAATAATAACATACCACTTAACAATTTATACAGTTTCATAAATTTACCCTTAAAGGATCTTTGTTTCATTATCAACGGGTTATTGATTGTAGTAGTATATCAAAGTTGAATAAATCAATTCATTTTTTCCTTTTTCAGTTGTATTGCAAAATTGTCCAGGAATATATGGGAAATAAGGGATTTGTTTTTTCAATTCACACATAAATTCGTTCGGAAACCTTGGCTTAAAAATAAGTTGGGACTGAATTTATTTTTTTTTAAAATTATTAAAATGGAGTTTAAAAAATCCCCATAAATAATTCAAAAATGAACAATTTTTGAGCGAACAATTGTTTTAAATAACTTCATCATCAGGCTCTACAGTTATAAGCCCATAATTATTGGGATATTTTACAAAG]




>consensus_6709#2
ATACTTTTACTATGGCTTCATAATAATAACATACCACTTAACAATTTATACAGTTTCATA
AATTTACCCTTAAAGGATCTTTGTTTCATTATCAACGGGTTATTGATTGTAGTAGTATAT
CAAAGTTGAATAAATCAATTCATTTTTTCCTTTTTCAGTTGTATTGCAAAATTGTCCAGG
AATATATGGGAAATAAGGGATTTGTTTTTTCAATTCACACATAAATTCGTTCGGAAACCT
TGGCTTAAAAATAAGTTGGGACTGAATTTATTTTTTTTTAAAATTATTAAAATGGAGTTT
AAAAAATCCCCATAAATAATTCAAAAATGAACAATTTTTGAGCGAACAATTGTTTTAAAT
AACTTCATCATCAGGCTCTACAGTTATAAGCCCATAATTATTGGGATATTTTACAAAG

consensusID : consensus_6709#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [GTTATGAGTCCATCATTATTGGAGATATTTTACAAAGGCCAAAAATGAGGCATGTATTAATGAATTTGACAATACTATATGTTAAAAAAAGGTGAACATTTGCATCTGTTACAACATATATACTTCAAAATTGTATTATTTGTAATTTAGAAAGGTCATTTAATAAAGGTCAAAATGATCTGCAATAAAGTGTCCAGTCACAATCAGTATAATAGTAATATAGGAAAACTGAAAATGCAGAAAAATCGTGTGAATAAAATGCATAGTAGGAGAATTTCATCTTGTCAATTGAGATAATAATGATAAATAGTAATAGTAATAATAATAAGATTGTTGTGTGAATATAATATGTAATAAAAGGGGTGTTATCAAGGTAATTACGATAAACGAATTGGGAATGATGGATGTGA]

[+] EMBL CD187656             [GTTATGAGTCCATCATTATTGGAGATATTTTACAAAGGCCAAAAATGAGGCATGTATTAATGAATTTGACAATACTATATGTTAAAAAAAGGTGAACATTTGCATCTGTTACAACATATATACTTCAAAATTGTATTATTTGTAATTTAGAAAGGTCATTTAATAAAGGTCAAAATGATCTGCAATAAAGTGTCCAGTCACAATCAGTATAATAGTAATATAGGAAAACTGAAAATGCAGAAAAATCGTGTGAATAAAATGCATAGTAGGAGAATTTCATCTTGTCAATTGAGATAATAATGATAAATAGTAATAGTAATAATAATAAGATTGTTGTGTGAATATAATATGTAATAAAAGGGGTGTTATCAAGGTAATTACGATAAACGAATTGGGAATGATGGATGTGA]




>consensus_6709#3
GTTATGAGTCCATCATTATTGGAGATATTTTACAAAGGCCAAAAATGAGGCATGTATTAA
TGAATTTGACAATACTATATGTTAAAAAAAGGTGAACATTTGCATCTGTTACAACATATA
TACTTCAAAATTGTATTATTTGTAATTTAGAAAGGTCATTTAATAAAGGTCAAAATGATC
TGCAATAAAGTGTCCAGTCACAATCAGTATAATAGTAATATAGGAAAACTGAAAATGCAG
AAAAATCGTGTGAATAAAATGCATAGTAGGAGAATTTCATCTTGTCAATTGAGATAATAA
TGATAAATAGTAATAGTAATAATAATAAGATTGTTGTGTGAATATAATATGTAATAAAAG
GGGTGTTATCAAGGTAATTACGATAAACGAATTGGGAATGATGGATGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6709#0      CGTTTGCTACGATTACGATTCGTCGATTTTAACGGTTGGGACGTATTACGTATGCTTCAT 60
consensus_6709#2      ---------------------------------------------------ATACTT--T 7
consensus_6709#3      ----------------------------------------------------------GT 2
consensus_6709#1      --------------------------CCTAAACTGAATATTATAAACCTCTTCCCTCCCT 34
                                                                                 *

consensus_6709#0      TACCGCCTACGTCAACGTAGACAACTTTCTACATCGACTTCGTAGTTTACACAACTTTCT 120
consensus_6709#2      TAC----TATGGCTTCATA-ATAATAACATACC---ACTTAACAATTTATACAGTTTCAT 59
consensus_6709#3      TAT-GAGTCCATCATTATTGGAGATATTTTACAAAGGCCAAAAATGAGGCATGTATTAAT 61
consensus_6709#1      TTTTGATTACCTCTATCTTAATCTTCACATCCATCATTCCCAATTCATAATTACCTTGAT 94
                      *      *    *    *           * *                       **  *

consensus_6709#0      ATACTCAATTCTCATATTCGAATCCCACAGCACATACATTGGCATAAACAATCCACACGA 180
consensus_6709#2      AAATTTA---CCCTTAAAGGATCTTTGTTTCATTATCAACGG-GTTATTGATTGTAGTAG 115
consensus_6709#3      GAATTTGACAATACTATATG-TTAAAAAAAGGTGAACATTTGCATCTGTTACAACATATA 120
consensus_6709#1      AACACCCTTCTTATTACGTA-TTATATTCACAC-AACAATCTTATCATTATTACTATTTG 152
                                    **                    **      *               

consensus_6709#0      AACGTTCAAAATCACCTACGAACAAGTGCGTGGTTGCTGAGT-TAAATTAAATTATATTG 239
consensus_6709#2      TATATCAAAGTTGA---ATAAATCAATTCATTTTTTCCTTTT-TCAGTTGTATTGCAA-A 170
consensus_6709#3      TACTTCAAAATTGTATTATTTGTAATTTAGAAAGGTC--ATT-TAATAAAGGTCAAAATG 177
consensus_6709#1      TCATTATTATCTCA---ATTGACAAGATGGAATTCTCCTGCTATGAATTTTATTCATACG 209
                          *   *  *     *      *           *    * * *      *       

consensus_6709#0      AG----CGAACAATTGTTTCCAATAACTTCATCATCAGGC-TCTACAGTTATAAGTCCAT 294
consensus_6709#2      AT----TGTCCAGGAATATATGGGAAATAAGGGATTTGTT-TTTTCAATT-CACACATAA 224
consensus_6709#3      ATC---TGCAATAAAGTGTCCAGTCA-CAATCAGTATAAT-AGTAATATAGGAAAACTGA 232
consensus_6709#1      ATTTTTCGCATTTACATTTTTGCTATATTACTATTGTACTGATTGTGACTGGACACTTTA 269
                      *      *        * *               *        *        *       

consensus_6709#0      -----AATTATCATAATATTTTACAAAGGCCAAAAATGAGTTCCGGGTTACATT-CTTTT 348
consensus_6709#2      -----ATTCGTTCGGAAACCTTGGCTTAAAAATAAGTTGGGACTGAATTTATTT-TTTTT 278
consensus_6709#3      -----AAATGCAGAAAAATCGTGTGAATAAAATGCATAGTAGGAGAATTTCATC-TTGTC 286
consensus_6709#1      CTGCAAATCATTTTGACCTTTATTAAATGACCTTTCTAATTTATAAATAACACAATTTTG 329
                           *         *                    *          *        * * 

consensus_6709#0      TAAAAATCTTCCATTTATACTTGGAAAATATTCATCAATAATCATGTTACTACCCAGTAT 408
consensus_6709#2      TAAAATTATTAAAATGGAGTTTAAAAAATCCCCATAAATAATT-CAAAAATGAACAATTT 337
consensus_6709#3      AATTGAGATAATAATGATAAATAGTAA-----TAGTAATAATAATAAGATTG------TT 335
consensus_6709#1      AAGTATAAATGTCGTAACAGATGCAGA-----CATTCACCATTTTTAACATATAACGTCA 384
                       *            *      *    *      *   *  **        *         

consensus_6709#0      ATGTGCATTTGATGGGTTAAATGAACACTATTATT----TTTAAAGTTA-GTGTTTATAT 463
consensus_6709#2      TTGAGCGAACAATTGTTTTAAATAACTTCATCATCAGGCTCTACAGTTATAAGCCCATAA 397
consensus_6709#3      GTGTGAATATAATATGTAATAAAAGGGGTGTTATC-------AAGGTAATTACGATAAAC 388
consensus_6709#1      AATTAATTAATACATTCCTCATTTTGGCCTTTGTAAAATATCATAATTATGGACTTATAA 444
                                 *        *         *  *        *   * *       * * 

consensus_6709#0      TCGTCAAGAGGTTTATATAAAATTGAGTGAATAAAGCAATCGTCATCCCTGTCTTTAGAA 523
consensus_6709#2      TTATTGGGATATTT-TACAAAG-------------------------------------- 418
consensus_6709#3      GAATTGGGAATGATGGATGTGA-------------------------------------- 410
consensus_6709#1      CTGTAGAGCCTGAT-GATGAAGTTATTGAAAACAATTGTTCGCTCAAATATTGCTCATTT 503
                         *   *     *  *                                           

consensus_6709#0      ATAGTCGGCGTAGAGTATGAACCGGACCGTAGCTGCTACCTTGACTTAGTGGTCGGACTT 583
consensus_6709#2      ------------------------------------------------------------
consensus_6709#3      ------------------------------------------------------------
consensus_6709#1      TTGAATATTCCATGAGGATCGTTAAACTGCCAAAGATCATGTAGTTTTTTTATTGGTATC 563
                                                                                  

consensus_6709#0      GCCTATCATGATTACTCATGCGAACTATATTGTATGAAACACG 626
consensus_6709#2      -------------------------------------------
consensus_6709#3      -------------------------------------------
consensus_6709#1      TTTAATGCTNTCATTTGTCCGACAATGGAATT----------- 595