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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence
[GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]
[+] EMBL CD081113 [GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTNTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTNCGAAACCGAATGCAGCACGACTTTATGTATAGCNGTTTGGTATATTAAATATTTT ]
[-] EMBL CD074936 [ TTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]
[-] EMBL CD074803 [ ATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]
consensusID : consensus_6725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT]
[+] EMBL CD080977 [GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6725#0 GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 60
consensus_6725#1 -------------------GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 41
***************************************
consensus_6725#0 AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 120
consensus_6725#1 AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 101
************************************************************
consensus_6725#0 TCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGC 180
consensus_6725#1 TCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNN-CGAATTCCAATCCTCCTTTTTGC 160
************* ***********************
consensus_6725#0 TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 240
consensus_6725#1 TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 220
************************************************************
consensus_6725#0 GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGG 300
consensus_6725#1 GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTT---------------------- 258
**************************************
consensus_6725#0 ATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 360
consensus_6725#1 --TAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 316
**********************************************************
consensus_6725#0 GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 420
consensus_6725#1 GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 376
************************************************************
consensus_6725#0 CTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAAT 480
consensus_6725#1 CTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAAT 436
****** ******************************
consensus_6725#0 GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 540
consensus_6725#1 GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 496
************************************************************
consensus_6725#0 AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTA 600
consensus_6725#1 AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGT--------------- 541
*********************************************
consensus_6725#0 GAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTA 660
consensus_6725#1 ---------------AAGGGTTNTAAA-CTNTATCTTCTATGGCTATCATTCAGTTNTTA 585
******* **** ** ************************* ***
consensus_6725#0 TGATTACAAAAGAGCCCTG-TTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACC 719
consensus_6725#1 TGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACC 645
***** * ******** ******** ******************************
consensus_6725#0 GAATGCAGCACGACTTTATGTATAGCGTTTT-GGTATATTAAATATTTTC 768
consensus_6725#1 CGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT- 694
***************************** *****************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||