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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence
[ATTATTTTTATTCAAAAACAATTGAAAATCTGTAAATACAATAATATTCCCGCGAAGCACTTGTCGAAATCGTATCGCTGAACTCTATTTGTCCATCACAATTTTGGCAGACTCAATAAATACATAAGGGAGGTAAAAGTGACACAGTGAATGGCGAATCGGTCAAACTTTTTTAACAATTTGTACAACATCTTCATCGTGAAGTATATGATCTTTACCTACACGCTGTGGTTGATGTTTTACTGACGAACCCCAAACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATTTGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGTAATCAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTAGCTCAAGTAGATCATCAAAATTCCATTTGTGATGAGCTGAAATGGGCACACAATGAGGAACACGACAAATGATATCTAACTCCTCAATAGTAATCTGATCAATTTTGTTGAGAACATATATACACGGAATATAAACACGACTACCTTCAATCACATCAATTAGATCTTCAGCAGTTGCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTTATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCTAGTTCGTTTTCTAAAAGCTTTTTGTGTTGTAAAGGCTTAAGGACATCTAGCACCATGAGAATGAGAGTGCAAGTTCGGGCAACAGCTATCACCTGTCTTCCTCTACCCTTTCCATCTTTGGCACCTTCTATAATACCGGGTAGATCAAGTAGTTGAATTTTAGCTCCTTTGTACCTGATAACGCCTGGCACAGTGGTAAGGGTTGTGAACTCATAAGCAGCCACTTCAGAATAGACACCGGCCAAATTGCACAGAAGTGTTGACTTTCCAACTGATGGGAAACCCACAAAGCCAATACGTGCATCTC]
[+] EMBL CD075005 [ATTATTTTTATTCAAAAACAATTGAAAATCTGTAAATACAATAATATTCCCGCGAAGCACTTGTCGAAATCGTATCGCTGAACTCTATTTGTCCATCACAATTTTGGCAGACTCAATAAATACATAAGGGAGGTAAAAGTGACACAGTGAATGGCGAATCGGTCAAACTTTTTTAACAATTTGTACAACATCTTCATCGTGAAGTATATGATCTTTACCTACACGCTGTGGTTGATGTTTTACTGACGAACCCCAAACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATTTGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGTAATCAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTAGCTCAAGTAGATCATCAAAATTCCATTTGTGATGAGCTGAAATGGGCACACAATGAGGAACACGACAAATGATATCTAACTCCTCAATAGTAATCTGATCAATTTTGTTGAGAACATATATACACGGAATATAAACACGACTACCTTCAATCACATCAATTAGATCTTCAGCAGTTGCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTTATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCTAGTTCGTTTTCTAA ]
[-] EMBL CD084193 [ TGTGGTTGATGTTTTACTGACGAACCCCATACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATTTGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGCAATCAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTAGCTCAAGTAGATCATCAAAATTCCATTTGTGATGAGCTGAAATGGGCACACAATGAGGAACACGACAAATGATATCTAACTCCTCAATAGTAATCTGATCAATTTTGTTGAGAACATATATACACGGAATATAAACACGACTACCTTCAATCACATCAATTAGATCTTCAGCAGTTGCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTTATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCct ]
[+] EMBL CD190469 [ TTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCTAGTTCGTTTTCTAAAAGCTTTTTGTGTTGTAAAGGCTTAAGGACATCTAGCACCATGAGAATGAGAGTGCAAGTTCGGGCAACAGCTATCACCTGTCTTCCTCTACCCTTTCCATCTTTGGCACCTTCTATAATACCGGGTAGATCAAGTAGTTGAATTTTAGCTCCTTTGTACCTGATAACGCCTGGCACAGTGGTAAGGGTTGTGAACTCATAAGCAGCCACTTCAGAATAGACACCGGCCAAATTGCACAGAAGTGTTGACTTTCCAACTGATGGGAAACCCACAAAGCCAATACGTGCATCTC]
consensusID : consensus_6740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[GCCTGATTACACGCTCCGGTTATTTTGAGATCTGCTTCGCACACTGTTGAGGACTTTTGCAACAAATTACACAAGACTTTAATCAAGGAATTCAAGTAGTAAGTTCAGATAACAGTTGAAAGATTTAATGAAATTTTGTATAAATGCTCCGATCACTTCTGGAAAGTTTTATATCAGAACAGTCGTTAAATACTGTTTATTAGATGATAAAGTGAAATAGTTCAATACATTCTTTTTAGTTCAAGTATTTTTTTAATTTTATGAAATCTGCAAACCCCTCGTATGCAACCAATGAATTACAGAATAAGCAAGAGCTTAAAAAGAAGTTAGTAGTATAAATCTCACAGAAAAGGAGTTAGACAAATAGTTCATAATCACTTTTGTCATTATTGATTTCTATGGTTGGTGATAGAACCTAGATATTCTGCGAGTTCATAGACTTCAGAGTATTTTCCCCATTTGAACACTTCCAAAATTCCTGGTCCATAGATCCAGTCCACANAGAACTGTTCCAACGCCATG]
[+] EMBL CD129916 [GCCTGATTACACGCTCCGGTTATTTTGAGATCTGCTTCGCACACTGTTGAGGACTTTTGCAACAAATTACACAAGACTTTAATCAAGGAATTCAAGTAGTAAGTTCAGATAACAGTTGAAAGATTTAATGAAATTTTGTATAAATGCTCCGATCACTTCTGGAAAGTTTTATATCAGAACAGTCGTTAAATACTGTTTATTAGATGATAAAGTGAAATAGTTCAATACATTCTTTTTAGTTCAAGTATTTTTTTAATTTTATGAAATCTGCAAACCCCTCGTATGCAACCAATGAATTACAGAATAAGCAAGAGCTTAAAAAGAAGTTAGTAGTATAAATCTCACAGAAAAGGAGTTAGACAAATAGTTCATAATCACTTTTGTCATTATTGATTTCTATGGTTGGTGATAGAACCTAGATATTCTGCGAGTTCATAGACTTCAGAGTATTTTCCCCATTTGAACACTTCCAAAATTCCTGGTCCATAGATCCAGTCCACANAGAACTGTTCCAACGCCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6740#0 ATTATTTTTATTCAAAAACAATTGAAAATCTGTAAATACAATAATATTCCCGCGAAGCAC 60
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 TTGTCGAAATCGTATCGCTGAACTCTATTTGTCCATCACAATTTTGGCAGACTCAATAAA 120
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 TACATAAGGGAGGTAAAAGTGACACAGTGAATGGCGAATCGGTCAAACTTTTTTAACAAT 180
consensus_6740#1 ------------------------------------GCCTGATTACACGCTCCGGTTATT 24
* * * ** * * *
consensus_6740#0 TTGTACAACATCTTCATCGTGAAGTAT-ATGATCTTTACCTACACGCTGTGGTTGATGTT 239
consensus_6740#1 TTG----AGATCTGCTTCGCACACTGTTGAGGACTTTTGCAACAAATTACA--CAAGACT 78
*** * **** * *** * * * * **** * *** * * *
consensus_6740#0 TTACTGACGAACCCCAAACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATT 299
consensus_6740#1 TTAATCAAGGAATTCAAGT---AGTAAGTTCAGATAACAGTTGAAAGATTTAATGAAATT 135
*** * * * * *** ** * * ** * ** * * ** ****
consensus_6740#0 TGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGTAAT 359
consensus_6740#1 TTGTATAAATGCTCCGATCACTTCTGGAA--AGTTTT----ATATCAGAACAGTCGTTA- 188
* * *** * * * ** * *** ** * * *** * * * ** ** *
consensus_6740#0 CAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTA 419
consensus_6740#1 ---AATACTGTTTATTAGAT----GATAAAGTGAAAT--AGTTCAA-TACATTCTTTTTA 238
**** ** * **** * ** **** ** *** * * ***
consensus_6740#0 GCTCAAGTAGATCATCAAAATTCC-ATTTGTGATGAGCTGAAATGGGCACACAATGAGGA 478
consensus_6740#1 GTTCAAGTATTTTTTTAATTTTATGAAATCTGCAAACCCCTCGTATGCAACCAATGAATT 298
* ******* * * ** ** * * ** * * * *** ******
consensus_6740#0 ACACGACAAATGATATCTAACTCCTCAAT-AGTAATCTGATCAATTTTGTTGAGAACATA 537
consensus_6740#1 ACAGAATAAGCAAGAGCTTAAAAAGAAGTTAGTAGTATAAATCTCACAGAAAAGGAGTTA 358
*** * ** * * ** * * * **** * * * * ** * **
consensus_6740#0 TATACACGGAATATAAACACGACTACCTTCAATCACATCAAT--TAGATCTTCAGCAGTT 595
consensus_6740#1 GACAAATAGTTCATAATCACTTTTGTCATTATTGATTTCTATGGTTGGTGAT-AGAACCT 417
* * * * **** *** * * * * * * ** ** * * * * ** * *
consensus_6740#0 GCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTT 655
consensus_6740#1 AGATATTCTGCGAGTTCATAGACTTCAGAGTATTTTCCCCATTTG-----AACACTTCCA 472
** * **** * ** ** ** * ** *** ** * **
consensus_6740#0 ATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTT 715
consensus_6740#1 A--AATTCCTGGTCCA---TAGATCCAGTCCACANAG---AACTGTTCCAACGCCATG-- 522
* * *** * **** **** ** * * * * *** ** * *
consensus_6740#0 TCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCT 775
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 AGTTCGTTTTCTAAAAGCTTTTTGTGTTGTAAAGGCTTAAGGACATCTAGCACCATGAGA 835
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 ATGAGAGTGCAAGTTCGGGCAACAGCTATCACCTGTCTTCCTCTACCCTTTCCATCTTTG 895
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 GCACCTTCTATAATACCGGGTAGATCAAGTAGTTGAATTTTAGCTCCTTTGTACCTGATA 955
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 ACGCCTGGCACAGTGGTAAGGGTTGTGAACTCATAAGCAGCCACTTCAGAATAGACACCG 1015
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 GCCAAATTGCACAGAAGTGTTGACTTTCCAACTGATGGGAAACCCACAAAGCCAATACGT 1075
consensus_6740#1 ------------------------------------------------------------
consensus_6740#0 GCATCTC 1082
consensus_6740#1 -------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||