These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 778 fasta sequence [GCCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCC-CCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTATACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATGCACTAGAAAAAATGCAAATTTGATATCATTTTGTATACATGAATAATTTCACATGTATAATCTATACATATTCAGCCAATATAAAATTTTCTGTTCAAAAAAAAAAAAAAAA] [+] EMBL CD081310 [GCCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCC CCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCANAG AACAAATTATACTTCGTTCTTTCTCGGAAGTTGATCATCCTGATTTATAAGTGATCAATTATT AAATGCACTACGAAAAATGCCAAATTGATATCATTTTGTATCCATGAATAA TTCACATGTATAATCTATACATATTC ] [-] EMBL CD075142 [ GCAGCGAAACGTGAAAACCTCCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCC CCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTATACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATGCACTAGAAAAAATGCAAATTTGATATCATTTTGTACACATGAATAATTTCACATGTATAATCTATACATATTCAGCCA ] [-] EMBL AI395404 [ GGCTGGTACCAGCCGCCGATAGTCGTCGTAGAAGACAAAACATTGCTTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTATACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATGCACTAGAAAAAATGCAAATTTGATATCATTTTGTATACATGAATAATTTCACATGTATAATCTATACATATTTAGCCAATATAAAATTTTCTGTTCAAAAAAAAAAAAAAAA] consensusID : consensus_6748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [ATTTTCGGCACGAGGCGGAGATACCGCTAAAGTGCTGTCGAAAATCGTTCTGGCTGCGAAAATTGGCGTAAATAAAATGACAAGTTTTGTCAAGCTAATCTGCTTCCAATTCTCGTCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATTCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATC] [+] EMBL CD083272 [ATTTTCGGCACGAGGCGGAGATACCGCTAAAGTGCTGTCGAAAATCGTTCTGGCTGCGAAAATTGGCGTAAATAAAATGACAAGTTTTGTCAAGCTAATCTGCTTCCAATTCTCGTCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATTCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6748#0 ------------------------------------------------------------ consensus_6748#1 ATTTTCGGCACGAGGCGGAGATACCGCTAAAGTGCTGTCGAAAATCGTTCTGGCTGCGAA 60 consensus_6748#0 ------------------------------------------------------GCCATC 6 consensus_6748#1 AATTGGCGTAAATAAAATGACAAGTTTTGTCAAGCTAATCTGCTTCCAATTCTCGTCATC 120 * **** consensus_6748#0 AGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTC 66 consensus_6748#1 AGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTC 180 ************************************************************ consensus_6748#0 AGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACC 126 consensus_6748#1 AGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACC 240 ************************************************************ consensus_6748#0 AGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGT 186 consensus_6748#1 AGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGT 300 ************************************************************ consensus_6748#0 TCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTC 246 consensus_6748#1 TCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTC 360 ************************************************************ consensus_6748#0 ATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCG 306 consensus_6748#1 ATTCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCG 420 ** ********************************************************* consensus_6748#0 AGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATC 366 consensus_6748#1 AGTGC-------------------------------------------------TTAATC 431 ***** ****** consensus_6748#0 TTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACA 426 consensus_6748#1 TTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACA 491 ************************************************************ consensus_6748#0 TTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACA 486 consensus_6748#1 TTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACA 551 ************************************************************ consensus_6748#0 TTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAG 546 consensus_6748#1 TTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAG 611 ************************************************************ consensus_6748#0 AATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTA 606 consensus_6748#1 AATTCGATTATCGATATC------------------------------------------ 629 ****************** consensus_6748#0 TACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATG 666 consensus_6748#1 ------------------------------------------------------------ consensus_6748#0 CACTAGAAAAAATGCAAATTTGATATCATTTTGTATACATGAATAATTTCACATGTATAA 726 consensus_6748#1 ------------------------------------------------------------ consensus_6748#0 TCTATACATATTCAGCCAATATAAAATTTTCTGTTCAAAAAAAAAAAAAAAA 778 consensus_6748#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||