These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence [CGGCACGAGGGANATTGGCTTAAAATATACCGGAGACAATCATATTTATCCAGCCAAGCTAGCTGTCTGCGAAGTTTGCTTCTGTTTGTTTTGGCCGATATTTGGACATCCTTGTCATTATCCTGATAAAGAACAACGTATACGTCTACTTACTCCATATGAATTTATTGCGCTCTTCCAAATCTGATCCAGATCTGTTCATTATAATCATACTTTAAAACATTAGAGTGCCTTCAATTTATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTATTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCATTTACTCATATAATGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTTATTTATTTGATCCTTCTTAAACAAAGGAAAATCTTAACTTTTATTCATCATAATCTTATGGGAAATATGATCATTTTTCTAGTTTTGTTTTTTTTATGGATCTATCCTGATTTTATTTCCGGTTTATGTGGGAACTTGTCAACCTCTTTTCTTTCTTTTTTTTTAAAAAAAGAA] [+] EMBL CD081611 [CGGCACGAGGGANATTGGCTTAAAATATACCGGAGACAATCATATTTATCCAGCCAAGCTAGCTGTCTGCGAAGTTTGCTTCTGTTTGTTTTGGCCGATATTTGGACATCCTTGTCATTATCCTGATAAAGAACAACGTATACGTCTACTTACTCCATATGAATTTATTGCGCTCTTCCAAATCTGATCCAGATCTGTTCATTATAATCATACTTTAAAACATTAGAGTGCCTTCAATTTATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTATTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCATTTACTCATATAATGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTTATTTATTTGATCCTTCTTAAACAAAGGAAAATCTTAACTTTTATTCATCATAATCTTATGGGAAATATGATCATTTTTCTAGTTTTGTTTTTTTTATGGATCTATCCTGATTTTATTTCCGGTTTATGTGGGAACTTGTCAACCTCTTTTCTTTCTTTTTTTTTAAAAAAAGAA] [+] EMBL CD088510 [ TAAAACATTAGAGTGCCTTCAATTTATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTATTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCATTTACTCATATAATGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTTATTTATTTGATCCTTCTTAAACAAAGGAAAATCTTAACTTTTA ] consensusID : consensus_6764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 391 fasta sequence [AGAGATGTATATTTATATGACCTGCCTTGTTAAACGAAAAAATAAATAAGTATTTATGTATATGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGATATGATAAANACAAAACAAAAAAATAAATCTTGCGACAACATAAACAGAAGAAAAATAAATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCAACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTCCCCCTTTTTTTGGCCGATCACAGTTTGATGTAAATATATAAGANCTATATATATGTATTGACATGCTCATGCTCACATGAAGATATATATTTTATTGAAAGGGGGGGCCCTTT] [+] EMBL AA999647 [AGAGATGTATATTTATATGACCTGCCTTGTTAAACGAAAAAATAAATAAGTATTTATGTATATGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGATATGATAAANACAAAACAAAAAAATAAATCTTGCGACAACATAAACAGAAGAAAAATAAATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCAACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTCCCCCTTTTTTTGGCCGATCACAGTTTGATGTAAATATATAAGANCTATATATATGTATTGACATGCTCATGCTCACATGAAGATATATATTTTATTGAAAGGGGGGGCCCTTT] [+] EMBL CD075434 [AGAGATGTATATTTATATGA CTGCTTTGTTAAACGAAAAAATAAATAAGTATTTATGTATATGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGATATGATAAAAACAAAACAAAAAAATAAATCTTGCGACAACATAAACAGAAAAAAAATAAATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCAACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTTCTTCTTTTTTTGGCCGATCACAGTTTGATGTAAATATATAAGA ATATATATATGTATTGACATGCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6764#0 CGGCACGAGGGANATTGGCTTAAAATATACCGGAGACAATCATATTTATCCAGCCAAGCT 60 consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 AGCTGTCTGCGAAGTTTGCTTCTGTTTGTTTTGGCCGATATTTGGACATCCTTGTCATTA 120 consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 TCCTGATAAAGAACAACGTATACGTCTACTTACTCCATATGAATTTATTGCGCTCTTCCA 180 consensus_6764#1 ---------------------------------------------------------AGA 3 * consensus_6764#0 AATCTGATCCAGATCTGTTCATTATAATCATACTTTAAAACATTAGAGTGCCTTCA-ATT 239 consensus_6764#1 GATGT-ATATTTATATGACCTGCCTTGTTAAACGAAAAAATAAATAAGTATTTATGTATA 62 ** * ** ** ** * * * * ** **** * *** * ** consensus_6764#0 TATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTA 299 consensus_6764#1 TGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGA 122 * *** * * ****** * * **** ** ******* *** * * consensus_6764#0 TTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCA 359 consensus_6764#1 TATGATAAANACAAAACAAAAAAATAAATCTTGCGA-CAACATAAACAGAAGAAAAATAA 181 * **** * * * * * * *** ***** ******* * consensus_6764#0 TTTACTCATATAA-TGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTT 418 consensus_6764#1 ATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCA 241 *** * **** *** * * * * ** * * * * * * * consensus_6764#0 ATTTATTTGA-------TCCTTCTTAAACAAAGGAAAATCTTAACTTTTATTCATCATAA 471 consensus_6764#1 ACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTCCCCCTTTTTTTGGCCGATCACAG 301 * * * * ** *** * * * * *** **** * consensus_6764#0 TCTTATGGGAA---ATATGATCATTTTTCTAGTTTTGTTTTTTTTATGGATCTATCCTGA 528 consensus_6764#1 TTTGATGTAAATATATAAGANCTATATATATGTATTGACATGCTCATGCTCACATGAAGA 361 * * *** ** *** ** * * * ** *** * * *** ** ** consensus_6764#0 TTTTATTTCCGGTTTATGTGGGAACTTGTCAACCTCTTTTCTTTCTTTTTTTTTAAAAAA 588 consensus_6764#1 TATATATTTTATTGAAAGGGGGGGCCCTTT------------------------------ 391 * * ** * * * *** * * consensus_6764#0 AGAA 592 consensus_6764#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||