cluster # 6764

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Schistosoma mansoni
cluster # 6764 cluster # 6764 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6764#0 length = 592 sequences # 2

consensus_6764#1 length = 391 sequences # 2

consensusID : consensus_6764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 592
fasta sequence

                              [CGGCACGAGGGANATTGGCTTAAAATATACCGGAGACAATCATATTTATCCAGCCAAGCTAGCTGTCTGCGAAGTTTGCTTCTGTTTGTTTTGGCCGATATTTGGACATCCTTGTCATTATCCTGATAAAGAACAACGTATACGTCTACTTACTCCATATGAATTTATTGCGCTCTTCCAAATCTGATCCAGATCTGTTCATTATAATCATACTTTAAAACATTAGAGTGCCTTCAATTTATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTATTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCATTTACTCATATAATGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTTATTTATTTGATCCTTCTTAAACAAAGGAAAATCTTAACTTTTATTCATCATAATCTTATGGGAAATATGATCATTTTTCTAGTTTTGTTTTTTTTATGGATCTATCCTGATTTTATTTCCGGTTTATGTGGGAACTTGTCAACCTCTTTTCTTTCTTTTTTTTTAAAAAAAGAA]

[+] EMBL CD081611             [CGGCACGAGGGANATTGGCTTAAAATATACCGGAGACAATCATATTTATCCAGCCAAGCTAGCTGTCTGCGAAGTTTGCTTCTGTTTGTTTTGGCCGATATTTGGACATCCTTGTCATTATCCTGATAAAGAACAACGTATACGTCTACTTACTCCATATGAATTTATTGCGCTCTTCCAAATCTGATCCAGATCTGTTCATTATAATCATACTTTAAAACATTAGAGTGCCTTCAATTTATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTATTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCATTTACTCATATAATGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTTATTTATTTGATCCTTCTTAAACAAAGGAAAATCTTAACTTTTATTCATCATAATCTTATGGGAAATATGATCATTTTTCTAGTTTTGTTTTTTTTATGGATCTATCCTGATTTTATTTCCGGTTTATGTGGGAACTTGTCAACCTCTTTTCTTTCTTTTTTTTTAAAAAAAGAA]
[+] EMBL CD088510             [                                                                                                                                                                                                                       TAAAACATTAGAGTGCCTTCAATTTATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTATTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCATTTACTCATATAATGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTTATTTATTTGATCCTTCTTAAACAAAGGAAAATCTTAACTTTTA                                                                                                                                   ]




>consensus_6764#0
CGGCACGAGGGANATTGGCTTAAAATATACCGGAGACAATCATATTTATCCAGCCAAGCT
AGCTGTCTGCGAAGTTTGCTTCTGTTTGTTTTGGCCGATATTTGGACATCCTTGTCATTA
TCCTGATAAAGAACAACGTATACGTCTACTTACTCCATATGAATTTATTGCGCTCTTCCA
AATCTGATCCAGATCTGTTCATTATAATCATACTTTAAAACATTAGAGTGCCTTCAATTT
ATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTAT
TATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCAT
TTACTCATATAATGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTTAT
TTATTTGATCCTTCTTAAACAAAGGAAAATCTTAACTTTTATTCATCATAATCTTATGGG
AAATATGATCATTTTTCTAGTTTTGTTTTTTTTATGGATCTATCCTGATTTTATTTCCGG
TTTATGTGGGAACTTGTCAACCTCTTTTCTTTCTTTTTTTTTAAAAAAAGAA

consensusID : consensus_6764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 391
fasta sequence

                              [AGAGATGTATATTTATATGACCTGCCTTGTTAAACGAAAAAATAAATAAGTATTTATGTATATGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGATATGATAAANACAAAACAAAAAAATAAATCTTGCGACAACATAAACAGAAGAAAAATAAATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCAACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTCCCCCTTTTTTTGGCCGATCACAGTTTGATGTAAATATATAAGANCTATATATATGTATTGACATGCTCATGCTCACATGAAGATATATATTTTATTGAAAGGGGGGGCCCTTT]

[+] EMBL AA999647             [AGAGATGTATATTTATATGACCTGCCTTGTTAAACGAAAAAATAAATAAGTATTTATGTATATGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGATATGATAAANACAAAACAAAAAAATAAATCTTGCGACAACATAAACAGAAGAAAAATAAATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCAACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTCCCCCTTTTTTTGGCCGATCACAGTTTGATGTAAATATATAAGANCTATATATATGTATTGACATGCTCATGCTCACATGAAGATATATATTTTATTGAAAGGGGGGGCCCTTT]
[+] EMBL CD075434             [AGAGATGTATATTTATATGA CTGCTTTGTTAAACGAAAAAATAAATAAGTATTTATGTATATGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGATATGATAAAAACAAAACAAAAAAATAAATCTTGCGACAACATAAACAGAAAAAAAATAAATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCAACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTTCTTCTTTTTTTGGCCGATCACAGTTTGATGTAAATATATAAGA ATATATATATGTATTGACATGCTC                                             ]




>consensus_6764#1
AGAGATGTATATTTATATGACCTGCCTTGTTAAACGAAAAAATAAATAAGTATTTATGTA
TATGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCT
GATATGATAAANACAAAACAAAAAAATAAATCTTGCGACAACATAAACAGAAGAAAAATA
AATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTC
AACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTCCCCCTTTTTTTGGCCGATCACA
GTTTGATGTAAATATATAAGANCTATATATATGTATTGACATGCTCATGCTCACATGAAG
ATATATATTTTATTGAAAGGGGGGGCCCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6764#0      CGGCACGAGGGANATTGGCTTAAAATATACCGGAGACAATCATATTTATCCAGCCAAGCT 60
consensus_6764#1      ------------------------------------------------------------
                                                                                  

consensus_6764#0      AGCTGTCTGCGAAGTTTGCTTCTGTTTGTTTTGGCCGATATTTGGACATCCTTGTCATTA 120
consensus_6764#1      ------------------------------------------------------------
                                                                                  

consensus_6764#0      TCCTGATAAAGAACAACGTATACGTCTACTTACTCCATATGAATTTATTGCGCTCTTCCA 180
consensus_6764#1      ---------------------------------------------------------AGA 3
                                                                                 *

consensus_6764#0      AATCTGATCCAGATCTGTTCATTATAATCATACTTTAAAACATTAGAGTGCCTTCA-ATT 239
consensus_6764#1      GATGT-ATATTTATATGACCTGCCTTGTTAAACGAAAAAATAAATAAGTATTTATGTATA 62
                       ** * **    ** **  *    *  * * **   **** *    ***   *    ** 

consensus_6764#0      TATTTTCATTAGTCATAAATTTTTTTTATGACAATGATCTAGTATTTCTTTTCTTTTTTA 299
consensus_6764#1      TGTTTAAGGAAATAATAAATGGGACTAAAAACAAGCCCTCTGTTTTTCTTTACTTCCTGA 122
                      * ***     * * ******     * *  ****       ** ******* ***  * *

consensus_6764#0      TTATTTAAAGTTTGTATTTATTCTCATTTTCATCAAATAACTAAAACAAAAGAAAATGCA 359
consensus_6764#1      TATGATAAANACAAAACAAAAAAATAAATCTTGCGA-CAACATAAACAGAAGAAAAATAA 181
                      *    ****      *   *     *  *    * *  ***  ***** *******   *

consensus_6764#0      TTTACTCATATAA-TGTGCAATTTGACTACTTTCAAATCATTAGTATTCATTATTGTTTT 418
consensus_6764#1      ATTAGATAAATAAACAAACAAATAAATCAATAAGTAAATAGAGACAAACTTCAGTAGTCA 241
                       ***   * ****     *** *  *  * *    **  *     *  * * * *  *  

consensus_6764#0      ATTTATTTGA-------TCCTTCTTAAACAAAGGAAAATCTTAACTTTTATTCATCATAA 471
consensus_6764#1      ACTGGCGCAAAAAAAAGTTTTTTTTACAATATATTTCCCCCTTTTTTTGGCCGATCACAG 301
                      * *      *       *  ** *** *  *        * *   ***     **** * 

consensus_6764#0      TCTTATGGGAA---ATATGATCATTTTTCTAGTTTTGTTTTTTTTATGGATCTATCCTGA 528
consensus_6764#1      TTTGATGTAAATATATAAGANCTATATATATGTATTGACATGCTCATGCTCACATGAAGA 361
                      * * ***  **   *** ** *  * *    ** ***   *  * ***     **   **

consensus_6764#0      TTTTATTTCCGGTTTATGTGGGAACTTGTCAACCTCTTTTCTTTCTTTTTTTTTAAAAAA 588
consensus_6764#1      TATATATTTTATTGAAAGGGGGGGCCCTTT------------------------------ 391
                      * *   **    *  * * ***  *   *                               

consensus_6764#0      AGAA 592
consensus_6764#1      ----