These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1128 fasta sequence [ANATTCGGCACGAGGGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCTCACGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCGTGGCGTCGCCAACAGCCTTTTAAATTATATTTTACAATAAAAGAAACATCGAGGCATGGATTTTCTGTGGTCATGGAATCCCAACCTCCATCCACATCGAGTAACCTAACTCGTAGTATTTTAGAAAAATCTAAAATATGTCCCCAGAGTAATCATTCATCTTGGTCTGTAAAATCCAAATCCAGAAATTTCCCTACAAGTTCCCTTCGTAAACGAAATGTGAATAACTCTGATGATGAGATGGAGGCTACTCCATTTGAAGTCTCTGCGCCAAACTCAAAAATCTCATCACAATCATCCTGTAAAATATCACTTCCAACGCAGTTCATANAATCTATAAGCTTATCATCTCCTATGCTCAATACTTCAAGTTCTGTTTGTTCTTCGCTTGCCT-AAATCTAAC-TACGTNCTAATATTCCATAACTAGTCATTCGGATTTATGCCTCTGATGGTGCTTTATACTTTTGAGTCTGATTTTTCGGGTATATTATTGAAATTTTATTTATTCACATGGTTTTTTGTTCCTTGCTTTGTAAAGTCTCGTCAAAATCTGGAAGAATATTCCAATTTTTCTCCTAGTTTTGTACTAGGGATATTGTAAATTGTACATTTATTTTTCTTTTTATCATTGTTAACTACAGGCCATTTTTCTACTTCCTACCATAAAAAGACAATTAGTTTTCCGGTTTTTAAAACTTGATTCTGTTCTAAAATAATTCCTTTGACGTTTCAGATTCTTTTTCTGGTCTTTTTTTCACTGTTGTTTTATACTATATGCATTGTTGGTCCCTTTTCAGTGTGATACAAATTGTGCGGTTCATGGTTTGCTGAATTTATAAA] [+] EMBL CD082016 [ANATTCGGCACGAGGGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCTCACGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCGTGGCGTCGCCAACAGCCTTTTAAATTATATTTTACAATAAAAGAAACATCGAGGCATGGATTTTCTGTGGTCATGGAATCCCAACCTCCATCCACATCGAGTAACCTAACTCGTAGTATTTTAGAAAAATCTAAAATATGTCCCCAGAGTAATCATTCATCTTGGTCTGTAAAATCCAAATCCAGAAATTTCCCTACAAGTTCCCTTCGTAAACGAAATGTGAATAACTCTGATGATGAGATGGAGGCTACTCCATTTGAAGTCTCTGCGCCAAACTCAAAAATCTCATCACAATCATCCTGTAAAATATCACTTCCAACGCAGTTCATANAATCTATAAGCTTATCATCTCCTATGCTCAATACTTCAAGTTCTGTTTGTTCTTCGCTTGCCT AAATCTAAC TACGTN ] [-] EMBL CD075631 [ AAAAATCTCATCACAATCATCCTGTAAAATATCACTTCCAACGCAGTTCATAAAATCTATAAGCTTATCATCTCCTATGCTCAATACTTCAAGTTCTGTTTGTTCTTCGCTTGCCTAAAATCTAACTTACGTCCTAATATTCCATAACTAGTCATTCGGATTTATGCCTCTGATGGTGCTTTATACTTTTGAGTCTGATTTTTCGGGTATATTATTGAAATTTTATTTATTCACATGGTTTTTTGTTCCTTGCTTTGTAAAGTCTCGTCAAAATCTGGAAGAATATTCCAATTTTTCTCCTAGTTTTGTACTAGGGATATTGTAAATTGTACATTTATTTTTCTTTTTATCATTGTTAACTACAGGCCATTTTTCTACTTCCTACCATAAAAAGACAATTAGTTTTCCGGTTTTTAAAACTTGATTCTGTTCTAAAATAATTCCTTTGACGTTTCAGATTCTTTTTCTGGTCTTTTTTTCACTGTTGTTTTATACTATATGCATTGTTGGTCCCTTTTCAGTGTGATACAAATTGTGCGGTTCATGGTTTGCTGAATTTATAAA] consensusID : consensus_6780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence [TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCACATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAATTTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTACACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAAGAAGAAGATCGTCTAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCACAAGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCG] [-] EMBL CD153366 [TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCACATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAATTTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTACACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAAGAAGAAGATCGTCTAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCACAAGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCG] [-] EMBL CD160996 [TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCACATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAATTTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTACACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAAGAAGAAGATCGTCTAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCTCAAGTAAAACTTCTAGTCAAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6780#0 ------------------------------------------------------------ consensus_6780#1 TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCA 60 consensus_6780#0 ------------------------------------------------------------ consensus_6780#1 CATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAAT 120 consensus_6780#0 ------------------------------------------------------------ consensus_6780#1 TTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTAC 180 consensus_6780#0 ------------------------------------------------------------ consensus_6780#1 ACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAA 240 consensus_6780#0 ----ANATTCGGCACGAGGGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAA 56 consensus_6780#1 GAAGAAGATCGTC-TAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAA 299 * *** * ** ***************************************** consensus_6780#0 TGGTTGCTCACGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTAT 116 consensus_6780#1 TGGTTGCACAAGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTAT 359 ******* ** ************************************************* consensus_6780#0 CCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGAT 176 consensus_6780#1 CCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGAT 419 ************************************************************ consensus_6780#0 TCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGA 236 consensus_6780#1 TCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGA 479 ************************************************************ consensus_6780#0 CGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCGTGGCGTCG 296 consensus_6780#1 CGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCG-------- 531 **************************************************** consensus_6780#0 CCAACAGCCTTTTAAATTATATTTTACAATAAAAGAAACATCGAGGCATGGATTTTCTGT 356 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 GGTCATGGAATCCCAACCTCCATCCACATCGAGTAACCTAACTCGTAGTATTTTAGAAAA 416 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 ATCTAAAATATGTCCCCAGAGTAATCATTCATCTTGGTCTGTAAAATCCAAATCCAGAAA 476 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 TTTCCCTACAAGTTCCCTTCGTAAACGAAATGTGAATAACTCTGATGATGAGATGGAGGC 536 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 TACTCCATTTGAAGTCTCTGCGCCAAACTCAAAAATCTCATCACAATCATCCTGTAAAAT 596 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 ATCACTTCCAACGCAGTTCATANAATCTATAAGCTTATCATCTCCTATGCTCAATACTTC 656 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 AAGTTCTGTTTGTTCTTCGCTTGCCTAAATCTAACTACGTNCTAATATTCCATAACTAGT 716 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 CATTCGGATTTATGCCTCTGATGGTGCTTTATACTTTTGAGTCTGATTTTTCGGGTATAT 776 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 TATTGAAATTTTATTTATTCACATGGTTTTTTGTTCCTTGCTTTGTAAAGTCTCGTCAAA 836 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 ATCTGGAAGAATATTCCAATTTTTCTCCTAGTTTTGTACTAGGGATATTGTAAATTGTAC 896 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 ATTTATTTTTCTTTTTATCATTGTTAACTACAGGCCATTTTTCTACTTCCTACCATAAAA 956 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 AGACAATTAGTTTTCCGGTTTTTAAAACTTGATTCTGTTCTAAAATAATTCCTTTGACGT 1016 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 TTCAGATTCTTTTTCTGGTCTTTTTTTCACTGTTGTTTTATACTATATGCATTGTTGGTC 1076 consensus_6780#1 ------------------------------------------------------------ consensus_6780#0 CCTTTTCAGTGTGATACAAATTGTGCGGTTCATGGTTTGCTGAATTTATAAA 1128 consensus_6780#1 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||