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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1128 fasta sequence
[ANATTCGGCACGAGGGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCTCACGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCGTGGCGTCGCCAACAGCCTTTTAAATTATATTTTACAATAAAAGAAACATCGAGGCATGGATTTTCTGTGGTCATGGAATCCCAACCTCCATCCACATCGAGTAACCTAACTCGTAGTATTTTAGAAAAATCTAAAATATGTCCCCAGAGTAATCATTCATCTTGGTCTGTAAAATCCAAATCCAGAAATTTCCCTACAAGTTCCCTTCGTAAACGAAATGTGAATAACTCTGATGATGAGATGGAGGCTACTCCATTTGAAGTCTCTGCGCCAAACTCAAAAATCTCATCACAATCATCCTGTAAAATATCACTTCCAACGCAGTTCATANAATCTATAAGCTTATCATCTCCTATGCTCAATACTTCAAGTTCTGTTTGTTCTTCGCTTGCCT-AAATCTAAC-TACGTNCTAATATTCCATAACTAGTCATTCGGATTTATGCCTCTGATGGTGCTTTATACTTTTGAGTCTGATTTTTCGGGTATATTATTGAAATTTTATTTATTCACATGGTTTTTTGTTCCTTGCTTTGTAAAGTCTCGTCAAAATCTGGAAGAATATTCCAATTTTTCTCCTAGTTTTGTACTAGGGATATTGTAAATTGTACATTTATTTTTCTTTTTATCATTGTTAACTACAGGCCATTTTTCTACTTCCTACCATAAAAAGACAATTAGTTTTCCGGTTTTTAAAACTTGATTCTGTTCTAAAATAATTCCTTTGACGTTTCAGATTCTTTTTCTGGTCTTTTTTTCACTGTTGTTTTATACTATATGCATTGTTGGTCCCTTTTCAGTGTGATACAAATTGTGCGGTTCATGGTTTGCTGAATTTATAAA]
[+] EMBL CD082016 [ANATTCGGCACGAGGGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCTCACGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCGTGGCGTCGCCAACAGCCTTTTAAATTATATTTTACAATAAAAGAAACATCGAGGCATGGATTTTCTGTGGTCATGGAATCCCAACCTCCATCCACATCGAGTAACCTAACTCGTAGTATTTTAGAAAAATCTAAAATATGTCCCCAGAGTAATCATTCATCTTGGTCTGTAAAATCCAAATCCAGAAATTTCCCTACAAGTTCCCTTCGTAAACGAAATGTGAATAACTCTGATGATGAGATGGAGGCTACTCCATTTGAAGTCTCTGCGCCAAACTCAAAAATCTCATCACAATCATCCTGTAAAATATCACTTCCAACGCAGTTCATANAATCTATAAGCTTATCATCTCCTATGCTCAATACTTCAAGTTCTGTTTGTTCTTCGCTTGCCT AAATCTAAC TACGTN ]
[-] EMBL CD075631 [ AAAAATCTCATCACAATCATCCTGTAAAATATCACTTCCAACGCAGTTCATAAAATCTATAAGCTTATCATCTCCTATGCTCAATACTTCAAGTTCTGTTTGTTCTTCGCTTGCCTAAAATCTAACTTACGTCCTAATATTCCATAACTAGTCATTCGGATTTATGCCTCTGATGGTGCTTTATACTTTTGAGTCTGATTTTTCGGGTATATTATTGAAATTTTATTTATTCACATGGTTTTTTGTTCCTTGCTTTGTAAAGTCTCGTCAAAATCTGGAAGAATATTCCAATTTTTCTCCTAGTTTTGTACTAGGGATATTGTAAATTGTACATTTATTTTTCTTTTTATCATTGTTAACTACAGGCCATTTTTCTACTTCCTACCATAAAAAGACAATTAGTTTTCCGGTTTTTAAAACTTGATTCTGTTCTAAAATAATTCCTTTGACGTTTCAGATTCTTTTTCTGGTCTTTTTTTCACTGTTGTTTTATACTATATGCATTGTTGGTCCCTTTTCAGTGTGATACAAATTGTGCGGTTCATGGTTTGCTGAATTTATAAA]
consensusID : consensus_6780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence
[TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCACATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAATTTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTACACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAAGAAGAAGATCGTCTAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCACAAGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCG]
[-] EMBL CD153366 [TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCACATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAATTTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTACACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAAGAAGAAGATCGTCTAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCACAAGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTATCCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGATTCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGACGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCG]
[-] EMBL CD160996 [TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCACATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAATTTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTACACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAAGAAGAAGATCGTCTAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAATGGTTGCTCAAGTAAAACTTCTAGTCAAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6780#0 ------------------------------------------------------------
consensus_6780#1 TATCTCAAACTGAACACAACATGTCCAGTCTGCGCGACACTTTTGCATAAAACCAAACCA 60
consensus_6780#0 ------------------------------------------------------------
consensus_6780#1 CATTGTGCAATTCGGCCTGATCGTGCACTACAGTCTATCGTTTATAAGCTTATACCGAAT 120
consensus_6780#0 ------------------------------------------------------------
consensus_6780#1 TTATTTGAAAAGGAAATGCTATGTAGAAGAAAATTTTATGAAGCTCATCCTTCATGTTAC 180
consensus_6780#0 ------------------------------------------------------------
consensus_6780#1 ACCCGATCTTTAAGTCCTGAAAAACGTGGTGATTTAACCCTAAATACTTATGTACTTCAA 240
consensus_6780#0 ----ANATTCGGCACGAGGGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAA 56
consensus_6780#1 GAAGAAGATCGTC-TAAGCGTTGAACTTCGGTACTGGAATCAAAACGAACATAAGAATAA 299
* *** * ** *****************************************
consensus_6780#0 TGGTTGCTCACGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTAT 116
consensus_6780#1 TGGTTGCACAAGTAAAACTTCTAGTCAAACAGATTCAATCAGCCCGATACTGCCTGTTAT 359
******* ** *************************************************
consensus_6780#0 CCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGAT 176
consensus_6780#1 CCCCCCTACATTTTTACTTTGTCCACCTGAACTTACAGTGGGACATATTGAAAAGCTGAT 419
************************************************************
consensus_6780#0 TCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGA 236
consensus_6780#1 TCGAATGAAGTTCAATCTAAAACCTAGTGAGCATGAGGTTTCTGTTTTCTTTTCAGTCGA 479
************************************************************
consensus_6780#0 CGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCGTGGCGTCG 296
consensus_6780#1 CGATCTTTTTAATTCTAACTATACACTATCAGATCTTGCCTGCTTGTATGCG-------- 531
****************************************************
consensus_6780#0 CCAACAGCCTTTTAAATTATATTTTACAATAAAAGAAACATCGAGGCATGGATTTTCTGT 356
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 GGTCATGGAATCCCAACCTCCATCCACATCGAGTAACCTAACTCGTAGTATTTTAGAAAA 416
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 ATCTAAAATATGTCCCCAGAGTAATCATTCATCTTGGTCTGTAAAATCCAAATCCAGAAA 476
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 TTTCCCTACAAGTTCCCTTCGTAAACGAAATGTGAATAACTCTGATGATGAGATGGAGGC 536
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 TACTCCATTTGAAGTCTCTGCGCCAAACTCAAAAATCTCATCACAATCATCCTGTAAAAT 596
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 ATCACTTCCAACGCAGTTCATANAATCTATAAGCTTATCATCTCCTATGCTCAATACTTC 656
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 AAGTTCTGTTTGTTCTTCGCTTGCCTAAATCTAACTACGTNCTAATATTCCATAACTAGT 716
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 CATTCGGATTTATGCCTCTGATGGTGCTTTATACTTTTGAGTCTGATTTTTCGGGTATAT 776
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 TATTGAAATTTTATTTATTCACATGGTTTTTTGTTCCTTGCTTTGTAAAGTCTCGTCAAA 836
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 ATCTGGAAGAATATTCCAATTTTTCTCCTAGTTTTGTACTAGGGATATTGTAAATTGTAC 896
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 ATTTATTTTTCTTTTTATCATTGTTAACTACAGGCCATTTTTCTACTTCCTACCATAAAA 956
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 AGACAATTAGTTTTCCGGTTTTTAAAACTTGATTCTGTTCTAAAATAATTCCTTTGACGT 1016
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 TTCAGATTCTTTTTCTGGTCTTTTTTTCACTGTTGTTTTATACTATATGCATTGTTGGTC 1076
consensus_6780#1 ------------------------------------------------------------
consensus_6780#0 CCTTTTCAGTGTGATACAAATTGTGCGGTTCATGGTTTGCTGAATTTATAAA 1128
consensus_6780#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||