These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1024 fasta sequence [CTCCGAGCCAAGATTCGGCACGAGGCAGAAACCAGAAGAATCGGGACAGATAGGTTTAATCTTTTGGTCAGATTAGTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAACTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAACGATATATTTGGATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGAACGAATTGAGATCCTTGCTCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATCTCCTAGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGCGCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCTATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATAACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTTTCTAGTCTTAGTGTTCGTATTATCAGCAGTAAATCCTGAATTGTTTCACCGTACACTTAAAAATCTTGTTACGTATCTAAAACCCGGAGGTGTGCTATTGTTTCGAGATTATGGAAGGTTTGATTTAGCTCAGCTAAGATTTAAAAATGGTCAGTGTTTAAAAGATAATTTTTATATGAGATCAGATGGAACAAGGGTTTACTTTTTCACGCAAGATGAATTACACGAATTATTTACTGCTGTTGGTCTGGAAAAGATTCAGAACAAGGTTGATCGCAGATTAATTGTAAATCGCAAAAAGAAGTTAAAGATGTACAGAATTTGGATTCAATGTAAATATAACAAGATATAAT] [+] EMBL CD082671 [CTCCGAGCCAAGATTCGGCACGAGGCAGAAACCAGAAGAATCGGGACAGATAGGTTTAATCTTTTGGTCAGATTAGTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAACTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAACGATATATTTGGATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGAACGAATTGAGATCCTTGCTCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATCTCCTAGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGCGCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCTATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATAACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTT ] [+] EMBL CD184931 [ tttgttacaAGAAACCAGAAGAATCGGGACAGATAGGTTTAATCTTTTGGTCAGATTATTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAACTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAACGATATATTTGGATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGAACGAATTGAGATCCTTGCGCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAG ] [-] EMBL CD076266 [ TGAATTATTTTCTTCGACATCTCCTAGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGCGCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCTATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATAACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTTTCTAGTCTTAGTGTTCGTATTATCAGCAGTAAATCCTGAATTGTTTCACCGTACACTTAAAAATCTTGTTACGTATCTAAAACCCGGAGGTGTGCTATTGTTTCGAGATTATGGAAGGTTTGATTTAGCTCAGCTAAGATTTAAAAATGGTCAGTGTTTAAAAGATAATTTTTATATGAGATCAGATGGAACAAGGGTTTACTTTTTCACGCAAGATGAATTACACGAATTATTTACTGCTGTTGGTCTGGAAAAGATTCAGAACAAGGTTGATCGCAGATTAATTGTAAATCGCAAAAAGAAGTTAAAGATGTACAGAATTTGGATTCAATGTAAATATAACAAGATATAAT] consensusID : consensus_6810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [GAGGCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGTAAGAATTATGATGAAAAGATCCAGCTTCTCTAGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGGTTTTTGGAAGCTACTGCTCACTTTTTATGTTTAGAACGAATTGAGATCCTTGCGCATGAATACTGGGACAATTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATGTNGGGTTTTGACCCTTTTTTTAATTTTTTTTAGCTCCTAGCGTGCACATATATGAATGTAGTTGTGGTG] [+] EMBL CD078209 [GAGGCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGTAAGAATTATGATGAAAAGATCCAGCTTCTCTAGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGGTTTTTGGAAGCTACTGCTCACTTTTTATGTTTAGAACGAATTGAGATCCTTGCGCATGAATACTGGGACAATTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATGTNGGGTTTTGACCCTTTTTTTAATTTTTTTTAGCTCCTAGCGTGCACATATATGAATGTAGTTGTGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6810#0 CTCCGAGCCAAGATTCGGCACGAGGCAGAAACCAGAAGAATCGGGACAGATAGGTTTAAT 60 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 CTTTTGGTCAGATTAGTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAA 120 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 CTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAA-CGATATATTTGG 179 consensus_6810#1 ----------GAGGCGATATCTTACAGATG-CTTCCGATGTTTATGAGCGGAATGCTTGG 49 * * * *** * *** ***** * * ** * * ** ** **** consensus_6810#0 ATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCG 239 consensus_6810#1 TAA--GAATTATGATGAAAAGATCCAGCTTCT------------CTAGGGATGACTTTCG 95 ** * * * * *** * * ** ************* consensus_6810#0 ATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAA 299 consensus_6810#1 ATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAA 155 ************************************************************ consensus_6810#0 ACTCTCAGATGACTCTCAAG-----------------------------------AACGA 324 consensus_6810#1 ACTCTCAGATGACTCTCAAGGTTTTTGGAAGCTACTGCTCACTTTTTATGTTTAGAACGA 215 ******************** ***** consensus_6810#0 ATTGAGATCCTTGCTCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTC 384 consensus_6810#1 ATTGAGATCCTTGCGCATGAATACTGGGACAATTTTTATTCCCATCATGAAGATAGATTC 275 ************** ***************** *************************** consensus_6810#0 TTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATCTCCT 444 consensus_6810#1 TTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATGTNGG 335 ******************************************************* * consensus_6810#0 AGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGC 504 consensus_6810#1 GTTTTGACCCTTTTTTTAATTTTTTTTAGCTCCTAGCGTGC-ACATATATGAATGTAGTT 394 ** * * * * * ** * * * * * * ** * * ** consensus_6810#0 GCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCT 564 consensus_6810#1 GTGGTG------------------------------------------------------ 400 * * consensus_6810#0 ATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATA 624 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 ACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTTTCTAGTCTTAGTG 684 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 TTCGTATTATCAGCAGTAAATCCTGAATTGTTTCACCGTACACTTAAAAATCTTGTTACG 744 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 TATCTAAAACCCGGAGGTGTGCTATTGTTTCGAGATTATGGAAGGTTTGATTTAGCTCAG 804 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 CTAAGATTTAAAAATGGTCAGTGTTTAAAAGATAATTTTTATATGAGATCAGATGGAACA 864 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 AGGGTTTACTTTTTCACGCAAGATGAATTACACGAATTATTTACTGCTGTTGGTCTGGAA 924 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 AAGATTCAGAACAAGGTTGATCGCAGATTAATTGTAAATCGCAAAAAGAAGTTAAAGATG 984 consensus_6810#1 ------------------------------------------------------------ consensus_6810#0 TACAGAATTTGGATTCAATGTAAATATAACAAGATATAAT 1024 consensus_6810#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||