These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1031 fasta sequence [TGTACCAAGCTTACTGAAGTGATAATGGTTGTTTCCTTGGTAAGCATGGATTTCGAAGGACTTTGATGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATATAACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAAAGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGCGCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAATTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGAATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGTACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCTATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCAATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATGCGATTATTCCATTTTGTGACTATATTTTCATTTTATCAATTTTAGACAAAATTGTTTGTGTATTTGTTTTAGACAGATCAGGAGTTATTTAGGACACAAAAATCCTTTTGAACTATAATTTAGGATAACTGGATGATTGTGTAATTCGATTCTGTTGCATACTTTATATTATCTTAATTTTTCTATAGATAATGATCATTCATTTTAATCCTTACTAATGTTTCGTAAAGGTGAATGTCTATACTCAAGCCCCTGTATTTGACTAACATGGAATGCTCAATGTTAGGACTCTAATGTTTAGTTATGAATAATCAA] [+] EMBL CD083789 [TGTACCAAGCTTACTGAAGTGATAATGGTTGTTTCCTTGGTAAGCATGGATTTCGAAGGACTTTGATGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATATAACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAAAGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGCGCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAATTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGAATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAA ] [+] EMBL CD082806 [ TGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATATAACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAAAGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGCGCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAATTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGAATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGTACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCTATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCAATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATG ] [-] EMBL CD076398 [ GGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGTACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCTATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCAATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATGCGATTATTCCATTTTGTGACTATATTTTCATTTTATCAATTTTAGACAAAATTGTTTGTGTATTTGTTTTAGACAGATCAGGAGTTATTTAGGACACAAAAATCCTTTTGAACTATAATTTAGGATAACTGGATGATTGTGTAATTCGATTCTGTTGCATACTTTATATTATCTTAATTTTTCTATAGATAATGATCATTCATTTTAATCCTTACTAATGTTTCGTAAAGGTGAATGTCTATACTCAAGCCCCTGTATTTGACTAACATGGAATGCTCAATGTTAGGACTCTAATGTTTAGTTATGAATAATCAA] consensusID : consensus_6815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [AATTCGGTCCGAGGGTTTCTGGAACTATTCCAGTCATTTCGATGGTCATCAACATGTTCATGTTTTACCAGGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATANTAACCGAATCTGAATAAATNTCTATAGAGAAGTATCTGATC] [+] EMBL CD077615 [AATTCGGTCCGAGGGTTTCTGGAACTATTCCAGTCATTTCGATGGTCATCAACATGTTCATGTTTTACCAGGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATANTAACCGAATCTGAATAAATNTCTATAGAGAAGTATCTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6815#0 TGTACCAAGCTTACTGAAGTGATAATGGTTGTTTCCTTGGTAAGCATGG--ATTTCGAAG 58 consensus_6815#1 ----------------AATTCGGTCCGAGGGTTTCTGGAACTATTCCAGTCATTTCGATG 44 ** * * ***** * * ******* * consensus_6815#0 GACTTTGATGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTG 118 consensus_6815#1 GTCATCAACATGTTCATGTTTTACCA-------GGGATTGACGTGGTCGTAGCTAGTGTG 97 * * * * * ** * *** ** ************************** consensus_6815#0 ATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCT 178 consensus_6815#1 ATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCT 157 ************************************************************ consensus_6815#0 TGTTATAT-AACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAA 237 consensus_6815#1 TGTTATANTAACCGAATCTGAA-TAAATNTCTATAGAGAAGTATCTGATC---------- 206 ******* ************* ***** ********************* consensus_6815#0 AGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGC 297 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 GCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAA 357 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 TTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGA 417 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 ATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAG 477 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 TGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGT 537 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 ACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCT 597 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 ATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCA 657 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 ATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATGC 717 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 GATTATTCCATTTTGTGACTATATTTTCATTTTATCAATTTTAGACAAAATTGTTTGTGT 777 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 ATTTGTTTTAGACAGATCAGGAGTTATTTAGGACACAAAAATCCTTTTGAACTATAATTT 837 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 AGGATAACTGGATGATTGTGTAATTCGATTCTGTTGCATACTTTATATTATCTTAATTTT 897 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 TCTATAGATAATGATCATTCATTTTAATCCTTACTAATGTTTCGTAAAGGTGAATGTCTA 957 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 TACTCAAGCCCCTGTATTTGACTAACATGGAATGCTCAATGTTAGGACTCTAATGTTTAG 1017 consensus_6815#1 ------------------------------------------------------------ consensus_6815#0 TTATGAATAATCAA 1031 consensus_6815#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||