These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [CAGCTAAATAATACTTCTTGACTTCTTTGTTCTCAAATGCACGCCTAATCATACTTGCAGCTTTTGTATCATAAGCAATGCATATTAAACCGCTTGTTGGACAATCGAGTCGATGGACAAAATGAAACATATTTTTCAGTTTCCAGTTAACATAGCGTGGACGGTTGTAGAACAACTGCATTTGTAGGGTTAAACAGTTAATCCATGGGGTTGTGCAGTTTATAAGTAACTCAGGATGCTTATTTATGACTAAGAAGCCTTGATTCTCATGAACTACACGCAGGTCATTTATGTGAATCCAACGGTCTCTTCTTTTACGCAGGATTTGATACAATATTATTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTAGAACCTTGGGGGTCCGCAATGA] [+] EMBL CD126208 [CAGCTAAATAATACTTCTTGACTTCTTTGTTCTCAAATGCACGCCTAATCATACTTGCAGCTTTTGTATCATAAGCAATGCATATTAAACCGCTTGTTGGACAATCGAGTCGATGGACAAAATGAAACATATTTTTCAGTTTCCAGTTAACATAGCGTGGACGGTTGTAGAACAACTGCATTTGTAGGGTTAAACAGTTAATCCATGGGGTTGTGCAGTTTATAAGTAACTCAGGATGCTTATTTATGACTAAGAAGCCTTGATTCTCATGAACTACACGCAGGTCATTTATGTGAATCCAACGGTCTCTTCTTTTACGCAGGATTTGATACAATATTATTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATAT ] [-] EMBL CD061010 [ ATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTAGAACCTTGGGGGTCCGCAATGA] consensusID : consensus_6827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 371 fasta sequence [AGGATCTCCTCATAGGTTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGAACCTATGAGGGT] [+] EMBL CD060772 [AGGATCTCCTCATAGGTTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGAACCTATGAGGGT] [+] EMBL CD060804 [ cactATAGCCTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGAACCTATGAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6827#0 CAGCTAAATAATACTTCTTGACTTCTTTGTTCTCAAATGCACGCCTAATCATACTTGCAG 60 consensus_6827#1 ------------------------------------------------------------ consensus_6827#0 CTTTTGTATCATAAGCAATGCATATTAAACCGCTTGTTGGACAATCGAGTCGATGGACAA 120 consensus_6827#1 ------------------------------------------------------------ consensus_6827#0 AATGAAACATATTTTTCAGTTTCCAGTTAACATAGCGTGGACGGTTGTAGAACAACTGCA 180 consensus_6827#1 ------------------------------------------------------------ consensus_6827#0 TTTGTAGGGTTAAACAGTTAATCCATGGGGTTGTGCAGTTTATAAGTAACTCAGGATGCT 240 consensus_6827#1 ------------------------------------------------------------ consensus_6827#0 TATTTATGACTAAGAAGCCTTGATTCTCATGAACTACACGCAGGTCATTTATGTGAATCC 300 consensus_6827#1 ------------------------------------------------------------ consensus_6827#0 AACGGTCTCTTCTTT--TACGCAGGATTTGATACAATATTATTATATTCCAAACGACAAG 358 consensus_6827#1 -AGGATCTCCTCATAGGTTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAG 59 * * **** ** * * ********************** ****************** consensus_6827#0 AACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTC 418 consensus_6827#1 AACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTC 119 ************************************************************ consensus_6827#0 TCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTT 478 consensus_6827#1 TCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTT 179 ************************************************************ consensus_6827#0 ACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGA 538 consensus_6827#1 ACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGA 239 ************************************************************ consensus_6827#0 GTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGA 598 consensus_6827#1 GTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGA 299 ************************************************************ consensus_6827#0 GATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTA-GA 657 consensus_6827#1 GATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGA 359 ******************************************************** ** consensus_6827#0 ACCT-TGGGGGTCCGCAATGA 677 consensus_6827#1 ACCTATGAGGGT--------- 371 **** ** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||