These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 874 fasta sequence [GTCATATCAACTGGTGGTGGTTTGTCAACTTTTGTAATGGGCTTGTTAAGTCTTTTAAGGAGATTGAAATCCAAACCAGAACAAGAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGAGAAAGATTCGCCCATATTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGAAGGAATAGAATGGGTAATCAAATCAGTGAATACTCGTTCAAAATGAAATAGAATTCAATACCATTTTATAGATGTTATAACCTACCATGTGATTGTACAGTTAGTTAATGTATGATTTCATTAGTAATTTGTTATTACATAATAATTTATACCCTATTCATGATGGTTAAGAGAAATGANGAGATTGANNGAGAGAGTTNTATGAGGGATAATCTCTTTGNTATAGTTCCATACATTAACATTGCATTCGAACTTTCAAGTTCTCCTATATTCCATTNNCGGGGGGGGGGGGCTTCTCTGAATCTCTGAGATGGGAAGTTTATGAGTATAATGTT] [+] EMBL CD080139 [GTCATATCAACTGGTGGTGGTTTGTCAACTTTTGTAATGGGCTTGTTAAGTCTTTTAAGGAGATTGAAATCCAAACCAGAACAAGAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGAGAAAGATTCGCCCATATTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGAAGGAATAGAATGGGTAATCAAATCAGTGAATACTCGTTCAAAATGAAATAGAATTCAATACCATTTTATAGATGTTATAACCTACCATGTGATTGTACAGTTAGTTAATGTATGATTTCATTAGTAATTTGTTATTACATAATAATTTATACCCTATTCATGATGGTTAAGAGAAATGANGAGATTGANNGAGAGAGTTNTATGAGGGATAATCTCTTTGNTATAGTTCCATACATTAACATTGCATTCGAACTTTCAAGTTCTCCTATATTCCATTNNCGGGGGGGGGGGGCTTCTCTGAATCTCTGAGATGGGAAGTTTATGAGTATAATGTT] [+] EMBL CD191487 [ AAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGAAGGAATAGAATGGGTAATCAAATCAGTG ] consensusID : consensus_6834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [TCGNGCCGAGGCCTTTAAGGAGATTGAAATCCAAACCAGAACAAGTAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGCGAAAGATTCGCCCATACTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAAACCTATTTTCCATAATGGACAAGAAGAAGAAGAAGAAATAAACATAATGTCACATAGTAAGACACCACCATTGAATGCANAGCAGTTACGTAATGGTGAGAAAAAATCANATACTGATCATGCCAAAGACGTCCAAGCATAACAATAAACAAGCCTGAATGTCATGTTTGGT] [+] EMBL CD083151 [TCGNGCCGAGGCCTTTAAGGAGATTGAAATCCAAACCAGAACAAGTAAATAAGGATTCTTCTTCTTGGTCTAGATAATGCAGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCACTCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATATTGGAGGACAGCGAAAGATTCGCCCATACTGGAAAAACTACTTTGAAAATACAGATATCTTGATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTTGGAACTTTTATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAAACCTATTTTCCATAATGGACAAGAAGAAGAAGAAGAAATAAACATAATGTCACATAGTAAGACACCACCATTGAATGCANAGCAGTTACGTAATGGTGAGAAAAAATCANATACTGATCATGCCAAAGACGTCCAAGCATAACAATAAACAAGCCTGAATGTCATGTTTGG ] [-] EMBL CD076723 [ TATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACAAGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTATTAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAAACCTATTTTCCATAATGGCCAAGAAGAAGAAGAAGAAATAACCATAATGTCCCATAGTAAGCCCCCCCCATTGAATGCAAAGCAGTTACGTAATGGTGAGAAAAAATCAAATACTGATCATGCCAAAGACGTCCAAGCATAACAATAAACAAGCCTGAATGTCATGTTTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6834#0 GTCATATCAACTGGTGGTGGTTTGTCAACTTTTGTAATGGGCTTGTTAAGTCTTTTAAGG 60 consensus_6834#1 ----------------------------------------TCGNGCCGAGGCCTTTAAGG 20 * * ** * ******* consensus_6834#0 AGATTGAAATCCAAACCAGAACAAG-AAATAAGGATTCTTCTTCTTGGTCTAGATAATGC 119 consensus_6834#1 AGATTGAAATCCAAACCAGAACAAGTAAATAAGGATTCTTCTTCTTGGTCTAGATAATGC 80 ************************* ********************************** consensus_6834#0 AGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCAC 179 consensus_6834#1 AGGAAAGACAACTTTGCTTAAACATTTAGCATCTGAAGATATAACTCAAACTACTCCCAC 140 ************************************************************ consensus_6834#0 TCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATAT 239 consensus_6834#1 TCAGGGATTTAATATCAAAAGCGTTCAGTCCCAAGGGTTCAAACTAAATGTTTGGGATAT 200 ************************************************************ consensus_6834#0 TGGAGGACAGAGAAAGATTCGCCCATATTGGAAAAACTACTTTGAAAATACAGATATCTT 299 consensus_6834#1 TGGAGGACAGCGAAAGATTCGCCCATACTGGAAAAACTACTTTGAAAATACAGATATCTT 260 ********** **************** ******************************** consensus_6834#0 GATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTT 359 consensus_6834#1 GATTTATGTGATCGATAGTTCAGATAAAAAGCGCTTTGAGGAAACCGGAGAAGAACTCTT 320 ************************************************************ consensus_6834#0 GGAACTTTTATCAGAAGATAAATTAGCCGGCGTTCCTTTAATAGTGTTCGCCAATAAACA 419 consensus_6834#1 GGAACTTTTATCAGAAGATAAATTAGCCGGTGTTCCTTTAATAGTATTCGCCAATAAACA 380 ****************************** ************** ************** consensus_6834#0 AGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTAT 479 consensus_6834#1 AGACTTGCTCACCGCTGAACCGGCAAACAGAATATCAGATGGGCTTGGGTTACTAACTAT 440 ************************************************************ consensus_6834#0 TAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAGA 539 consensus_6834#1 TAGAGATAGACCATGGCAAATTCAGGGCTGTTCAGCTATAACTGGCAATGGTGTACAAAA 500 ********************************************************** * consensus_6834#0 AGGAATAGAATGGGTAATCAAATCAGTGAATACTCGTTCAAAATGAAATAGAATTCAATA 599 consensus_6834#1 ACCTAT--------TTTCCA---TAATGGACAAG-----AAGAAGAAGAAGAAATAAACA 544 * ** * ** * ** * * ** * *** **** * ** * consensus_6834#0 CCATTTTATAGATGTTATAACCTACCATGTGATTGTACAGTTAGTTAATGTATGATTTCA 659 consensus_6834#1 TAATGTCACATA-GTAAGACACCACCAT-TGAATGCANAGC-AGTTA---------CGTA 592 ** * * * * ** * * * ***** *** ** * ** ***** * consensus_6834#0 TTAGTAATTTGTTATTACATAATAATTTATACCCTATTCATGATGGTTAAGAGAAATGAN 719 consensus_6834#1 ATGGTGAGAAAAAATCANATACTGAT------CATGCCAAAGACGTCCAAGCATAACAAT 646 * ** * ** * *** * ** * * * ** * *** ** * consensus_6834#0 GAGATTGANNGAGAGAGTTNTATGAGGGATAATCTCTTTGNTATAGTTCCATACATTAAC 779 consensus_6834#1 AAA--CAAGCCTGAATGTCATGTTTGGT-------------------------------- 672 * * ** ** * * ** consensus_6834#0 ATTGCATTCGAACTTTCAAGTTCTCCTATATTCCATTNNCGGGGGGGGGGGGCTTCTCTG 839 consensus_6834#1 ------------------------------------------------------------ consensus_6834#0 AATCTCTGAGATGGGAAGTTTATGAGTATAATGTT 874 consensus_6834#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||