These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 715 fasta sequence [ACGCATACGGTAATGCAGCTGCATGGCATGTNNNTTTTTTTTTTTTTTTTTTTTTTTAATGGCCTATTCCTTTATTATCATTGTTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTTATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAGGATTTTCAATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTACAGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATTTACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCGAGGATGTTTTAACAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAG--CCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCTTCTCAACCCGAAGCACTTTGCCAGAACGCATGGACAACATGCCTTTATTAATCCGATCCCCTACCCCCCCCCATTTTTGGGTGGCCTGGTAAAATGCCTTTGTCCCCCCAATGAGGCCCTATTTTTTTTTTCTTGACAGAAAAATTTTTTTACCCAGACTGGGTCCCCCCAGGAAGTTTTTTAACAATTTTTCTC] [+] EMBL AW017229 [ACGCATACGGTAATGCAGCTGCATGGCATGTNNNTTTTTTTTTTTTTTTTTTTTTTTAATGGCCTATTCCTTTATTATCATTGTTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTTATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAGGATTTTCAATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTACAGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATTTACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCGAGGATGTTTTAACAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAG CCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGC ] [+] EMBL CD076903 [ GGCCTATTCCTTTATTATCATTGGTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTTTTTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAATTGTTTGCCAGGATTTTCAATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTACAGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATTTACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCCAGGATGTTTTAACAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCCTTAAATGGAGCTTTTGCCGCGCCCCTTTCAG ACCACAAAAATGTTGCCAGATGCTCTTCTGGCTTCTCAACCCGAAGCACTTTGCCAGAACGCATGGACAACATGCCTTTATTAATCCGATCCCCTACCCCCCCCCATTTTTGGGTGGCCTGGTAAAATGCCTTTGTCCCCCCAATGAGGCCCTATTTTTTTTTTCTTGACAGAAAAATTTTTTTACCCAGACTGGGTCCCCCCAGGAAGTTTTTTAACAATTTTTCTC] [+] EMBL AI067047 [ GTTCTGAAAAGTTATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAt ] consensusID : consensus_6844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [TTTAACCAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCATACTCAGCCGAAGCACTTTGCCAGAACGCATGAACAACATTACTTTTATAATCGCATCCACATACAGTCCCGTATTTTGTGTTGCCTGTTAAACTGCCATTGCACCAATTCAATTCATCAAACAGATATCCTGGAAATGTAGTTTCTAGAGAACG] [-] EMBL SM756 [TTTAACCAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCATACTCAGCCGAAGCACTTTGCCAGAACGCATGAACAACATTACTTTTATAATCGCATCCACATACAGTCCCGTATTTTGTGTTGCCTGTTAAACTGCCATTGCACCAATTCAATTCATCAAACAGATATCCTGGAAATGTAGTTTCTAGAGAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6844#0 ACGCATACGGTAATGCAGCTGCATGGCATGTNNNTTTTTTTTTTTTTTTTTTTTTTTAAT 60 consensus_6844#1 ------------------------------------------------------------ consensus_6844#0 GGCCTATTCCTTTATTATCATTGTTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTT 120 consensus_6844#1 ------------------------------------------------------------ consensus_6844#0 ATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAA 180 consensus_6844#1 ------------------------------------------------------------ consensus_6844#0 TGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAGGATTTTC 240 consensus_6844#1 ------------------------------------------------------------ consensus_6844#0 AATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTAC 300 consensus_6844#1 ------------------------------------------------------------ consensus_6844#0 AGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATT 360 consensus_6844#1 ------------------------------------------------------------ consensus_6844#0 TACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCGAGGATGTTTTAA 420 consensus_6844#1 ------------------------------------------------------TTTAAC 6 *** * consensus_6844#0 CAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCC 480 consensus_6844#1 CAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCC 66 ************************************************************ consensus_6844#0 ATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCTTCTCAACCCGAAGCACTTTG 540 consensus_6844#1 ATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCATACTCAGCCGAAGCACTTTG 126 *************************************** * * ************* consensus_6844#0 CCAGAACGCATGGACAACATGCCTTTATTAATCCGATCCCCTACCCCCCCCCATTTTTGG 600 consensus_6844#1 CCAGAACGCATGAACAACATTACTTTTATAATCGCATCCACATACAGTCCCGTATTTTGT 186 ************ ******* **** ***** **** * * *** ***** consensus_6844#0 GTGGCCTGGTAAAATGCCTTTGTCCCCCCAATGAGGCCCTATTTTTTTTTTCTTGACAGA 660 consensus_6844#1 GTTGCCTGTTAAACTGCCATTG--CACCAATTCAATTCATCAAACAGATATCCTGGAAAT 244 ** ***** **** **** *** * ** * * * * * * ** ** * consensus_6844#0 AAAATTTTTTTACCCAGACTGGGTCCCCCCAGGAAGTTTTTTAACAATTTTTCTC 715 consensus_6844#1 GTAGTTTCTAGAGAACG-------------------------------------- 261 * *** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||