These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [TTTCAGTGGAATTACCCGATGATGCTCTTTGATGACTTGACTGTCTAGATTGGTGATGATGATGATGACGTAGCGAAGAATTAACAGGATAAATATTTTCACCAGGACTTGCTGTTGAACGACTACCAGTACCACTACTACCGCCGCTGGAAGAATTAACACTATTCAAACTAGGAACAGTGTTGGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGATCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTGACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTTGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTT] [+] EMBL CD159199 [TTTCAGTGGAATTACCCGATGATGCTCTTTGATGACTTGACTGTCTAGATTGGTGATGATGATGATGACGTAGCGAAGAATTAACAGGATAAATATTTTCACCAGGACTTGCTGTTGAACGACTACCAGTACCACTACTACCGCCGCTGGAAGAATTAACACTATTCAAACTAGGAACAGTGTTGGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGATCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTGACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCANAACGTTGACTAGATCGTAATTTACTTTGNGTAGTTGNTGGAACGGAAGGTGAATTATTGCTCANATTATTCGAACTACTAGAATTGCTTACA ] [+] EMBL CD111253 [ GGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGATCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTGACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTTGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGA ] [+] EMBL CD114477 [ TCTGGAGGTGGTAGAGATGACTCAAAACGTTGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTT] consensusID : consensus_6857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CATTTAGAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCNCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTCTGTTTGAAGAAATGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTTTCCCGGAACCCCTCGTGACCTG] [-] EMBL CD077581 [CATTTAGAATGCAACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAATGTGATTGTGGTCNCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAAAACGTCTGTTTGAAGAAATGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAAGGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGACAGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTAATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTTTCCCGGAACCCCTCGTGACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6857#0 TTTCAGTGGAATTACCCGATGATGCTCTTTGATGACTTGACTGTCTAGATTGGTGATGAT 60 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GATGATGACGTAGCGAAGAATTAACAGGATAAATATTTTCACCAGGACTTGCTGTTGAAC 120 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 GACTACCAGTACCACTACTACCGCCGCTGGAAGAATTAACACTATTCAAACTAGGAACAG 180 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 TGTTGGAAATTATACCAGCATTTGTGTAGCGTAAATTTTGTATAGCATTTTCTGGAGTGA 240 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 TCGGTGCACTTCCTGGTATACTTGTGGGAGTTGAACGTTTTCGTGTGGAAGATTTATGTG 300 consensus_6857#1 ------------------------------------------------------------ consensus_6857#0 ACTCACGTGGTTCGTCAACTGTGTTCACTGATGCCTTCGATGTTGTCACATTTAAAATGC 360 consensus_6857#1 ------------------------------------------------CATTTAGAATGC 12 ****** ***** consensus_6857#0 AACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAAT 420 consensus_6857#1 AACCATTAGGATTAGTCAAACTCGCGCTGGCTGCTTCCATTCTGCGTCGTTTCGATGAAT 72 ************************************************************ consensus_6857#0 GTGATTGTGGTCCCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAA 480 consensus_6857#1 GTGATTGTGGTCNCGGTAAAGTAGTAACATCCTCGTCTGGAGGTGGTAGAGATGACTCAA 132 ************ *********************************************** consensus_6857#0 AACGT-------------TGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAA 527 consensus_6857#1 AACGTCTGTTTGAAGAAATGACTAGATCGTAATTTACTTTGGGTAGTTGTTGGAACGGAA 192 ***** ****************************************** consensus_6857#0 GGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGAC 587 consensus_6857#1 GGTGAATTATTGCTCAAATTATTCGAACTACTAGAATTGCTTACAGCTGTTACCGAAGAC 252 ************************************************************ consensus_6857#0 AGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTA 647 consensus_6857#1 AGTGACACAGACCCGGATGGTTGACCAGAAGGATTGCATTTCGAAGACTCTACAGCTGTA 312 ************************************************************ consensus_6857#0 ATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTT---------------------- 683 consensus_6857#1 ATAGACGTATTCACTGTTTGAGGCCGTGAACGTGTTTCCCGGAACCCCTCGTGACCTG 370 ************************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||