cluster # 6862

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Schistosoma mansoni
cluster # 6862 cluster # 6862 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6862#0 length = 683 sequences # 3

consensus_6862#1 length = 418 sequences # 1

consensusID : consensus_6862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 683
fasta sequence

                              [TTTGTGAGTGTATATGAATTAGAGCCAGCATATGGGGGTAATGATCTGGGGAAGTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACGGGGGGGCATACAGGTTGAGAAAAAGATGTATGATTATTGAGAGTTAAAGGATGTTGAAAGGTATTTGAGGAATACGAATGGTAAGGTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGAAGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATAGCAGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGCCGCTGAACCCTGGTTAACTTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGCTTTTTTAAGTTCACAGCGCTTTGAAAATATGGCGTACGCGTCGAATATTTTTTCATCATTGGTAAGGTTATCTGATGCTGGTTGATGCATTATATTCTGTGGTTCATATGGGTTAATAAGTGACTTTAAAGGAGGATTGTTTTGCGCATGCCGATTAAATGACGTTGAAACGACTTGATTTTTATGAAACTCAACACCTCTTTGAGGTGAATTCGGGATTTTATTCAGTCCTTCTCTGTTTATGGGTACGGGAGCATAAACAGGCCT]

[-] EMBL CD078072             [TTTGTGAGTGTATATGAATTAGAGCCAGCATATGGGGGTAATGATCTGGGGAAGTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACGGGGGGGCATACAGGTTGAGAAAAAGATGTATGATTATTGAGAGTTAAAGGATGTTGAAAGGTATTTGAGGAATACGAATGGTAAGGTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGAAGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATAGCAGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGCC                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD156604             [                                                                                                                                                                                                       GTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGAAGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATACCAGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGTGGCTGAACCCTGGTTAACTTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGCTTTTTTAAGTTCACAGCGCTTTGAAAATATGGCGTACGCGTCGAATATTTTTTCATCATTGGTAAGGTTATCTG                                                                                                                                                                                                 ]
[-] EMBL CD165338             [                                                                                                                                                                                                                                                                                                                                                                 AACTTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGCTTTTTTAAGTTCACAGCGTTTTGAAAATATGGTGTACGCGTCGAATATTTTTTCATCATTGGTAAGGTTATCTGATGCTGGTTGATGCATTATATTCTGTGGTTCATATGGGTTAATAAGTGACTTTAAAGGAGGATTGTTTTGCGCATGCCGATTAAATGACGTTGAAACGACTTGATTTTTATGAAACTCAACACCTCTTTGAGGTGAATTCGGGATTTTATTCAGTCCTTCTCTGTTTATGGGTACGGGAGCATAAACAGGCCT]




>consensus_6862#0
TTTGTGAGTGTATATGAATTAGAGCCAGCATATGGGGGTAATGATCTGGGGAAGTTCATT
AGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACGGGGGGG
CATACAGGTTGAGAAAAAGATGTATGATTATTGAGAGTTAAAGGATGTTGAAAGGTATTT
GAGGAATACGAATGGTAAGGTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGAAGTA
TGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATAGCAGAT
AGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGCCGCTGAACCCTGGTTAACTTCA
CCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGCTTTT
TTAAGTTCACAGCGCTTTGAAAATATGGCGTACGCGTCGAATATTTTTTCATCATTGGTA
AGGTTATCTGATGCTGGTTGATGCATTATATTCTGTGGTTCATATGGGTTAATAAGTGAC
TTTAAAGGAGGATTGTTTTGCGCATGCCGATTAAATGACGTTGAAACGACTTGATTTTTA
TGAAACTCAACACCTCTTTGAGGTGAATTCGGGATTTTATTCAGTCCTTCTCTGTTTATG
GGTACGGGAGCATAAACAGGCCT

consensusID : consensus_6862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [AACCTGTATGCCCGCCCGTGTATGCTAATCAGCCTACTAACCATAAAATCCCTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACTCCCTTTAATGCCACTCAATCTAATGAACTTCCCCAGATCATTACCCCCATATGCTGCTCCTAATTCATATACACTCACAAACCCACATACCAATAGTTCTTTTTGGCCTGGTCATCTCAATCTTGATTCATCTGTTCCAAGTGCCTCACAGTCATTACAGTACTATAATTCTTCGTTTCTTCCTACATTCAAGTACTTCATTTAATTGGATTTATTGGGGCCGTTTTCCAGGGTCCTTGGACGGTTTAAAAACTTTGTTTTAACCGGCCTTAAAAAGTTCCGCCCTGGTTTTAGAATGGAAATTTT]

[+] EMBL CD077754             [AACCTGTATGCCCGCCCGTGTATGCTAATCAGCCTACTAACCATAAAATCCCTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACTCCCTTTAATGCCACTCAATCTAATGAACTTCCCCAGATCATTACCCCCATATGCTGCTCCTAATTCATATACACTCACAAACCCACATACCAATAGTTCTTTTTGGCCTGGTCATCTCAATCTTGATTCATCTGTTCCAAGTGCCTCACAGTCATTACAGTACTATAATTCTTCGTTTCTTCCTACATTCAAGTACTTCATTTAATTGGATTTATTGGGGCCGTTTTCCAGGGTCCTTGGACGGTTTAAAAACTTTGTTTTAACCGGCCTTAAAAAGTTCCGCCCTGGTTTTAGAATGGAAATTTT]




>consensus_6862#1
AACCTGTATGCCCGCCCGTGTATGCTAATCAGCCTACTAACCATAAAATCCCTTCATTAG
ATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACTCCCTTTAA
TGCCACTCAATCTAATGAACTTCCCCAGATCATTACCCCCATATGCTGCTCCTAATTCAT
ATACACTCACAAACCCACATACCAATAGTTCTTTTTGGCCTGGTCATCTCAATCTTGATT
CATCTGTTCCAAGTGCCTCACAGTCATTACAGTACTATAATTCTTCGTTTCTTCCTACAT
TCAAGTACTTCATTTAATTGGATTTATTGGGGCCGTTTTCCAGGGTCCTTGGACGGTTTA
AAAACTTTGTTTTAACCGGCCTTAAAAAGTTCCGCCCTGGTTTTAGAATGGAAATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6862#0      ----TTTGTGAGTGTATATGAATTAGAGCCAGCATATGGGGGTAATGATCTGGGGAAGTT 56
consensus_6862#1      AACCTGTATGCCCGCCCGTGTATGCTAATCAGCCTACTAACCATAAAATCCC------TT 54
                          * * **   *    ** **   *  **** **        *  ***        **

consensus_6862#0      CATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACGGG 116
consensus_6862#1      CATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACTCC 114
                      *********************************************************   

consensus_6862#0      GGGGCATACAGGTTGAGAAAAAGATGTATGATTATTGAGAGTTAAAGGATGTTGAAAGGT 176
consensus_6862#1      CTTTAATGCCACTCAATCTAATGAACTTCCCCAGATCATTACCCCCATATGCTGCTCC-T 173
                           ** *   *  *   ** **  *        * *          *** **     *

consensus_6862#0      ATTTGAGGAATACGAATGGTAAGGTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGA 236
consensus_6862#1      AATTCATATACACTCACAAACCCACATACCAATAGTTCTTTTTGGCCT--GGTCATCTCA 231
                      * ** *   * **  *         * *    * *     *  *       ** ** * *

consensus_6862#0      AGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATAGC 296
consensus_6862#1      A-TCTTGATTCATCTGTTCC----AAGTGCCTCACAGTCAT-TACAGTACTATAATTCTT 285
                      * * *  * ** * *  *      * ***  ***    **  ** *  *  *  * *   

consensus_6862#0      AGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGCCGCTGAACCCTGGTTAAC 356
consensus_6862#1      CGTT--TCTTCCTACATTCAAGTACTTCATTTAATTG------GATTTATTGGGGCCGTT 337
                       * *  ** ** * ** *  ***  *  *  *    *      * *  *    **     

consensus_6862#0      TTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGC 416
consensus_6862#1      TTCCAGGGTCCTTGGACGGTTTAAAAACTTTG----TTTTAACCGGCCTTAAA---AAGT 390
                      ***     ** **  ***  * *** *  * *    ***** ** **  *       ** 

consensus_6862#0      TTTTTTAAGTTCACAGCGCTTTGAAAATATGGCGTACGCGTCGAATATTTTTTCATCATT 476
consensus_6862#1      TCCGCCCTGGTTTTAGAA---TGGAAATTTT----------------------------- 418
                      *       * *   **     ** **** *                              

consensus_6862#0      GGTAAGGTTATCTGATGCTGGTTGATGCATTATATTCTGTGGTTCATATGGGTTAATAAG 536
consensus_6862#1      ------------------------------------------------------------
                                                                                  

consensus_6862#0      TGACTTTAAAGGAGGATTGTTTTGCGCATGCCGATTAAATGACGTTGAAACGACTTGATT 596
consensus_6862#1      ------------------------------------------------------------
                                                                                  

consensus_6862#0      TTTATGAAACTCAACACCTCTTTGAGGTGAATTCGGGATTTTATTCAGTCCTTCTCTGTT 656
consensus_6862#1      ------------------------------------------------------------
                                                                                  

consensus_6862#0      TATGGGTACGGGAGCATAAACAGGCCT 683
consensus_6862#1      ---------------------------