cluster # 6916

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Schistosoma mansoni
cluster # 6916 cluster # 6916 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6916#0 length = 725 sequences # 1

consensus_6916#1 length = 653 sequences # 3

consensusID : consensus_6916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence

                              [ATTATGGACATCAAGGTTAATATCGACGGAGTACTCAGAGAAGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGGTAATAACAACATAGTGATAGTAATAAATATATAAAGATGGTTATTCTACATTGG]

[+] EMBL CD080654             [ATTATGGACATCAAGGTTAATATCGACGGAGTACTCAGAGAAGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGGTAATAACAACATAGTGATAGTAATAAATATATAAAGATGGTTATTCTACATTGG]




>consensus_6916#0
ATTATGGACATCAAGGTTAATATCGACGGAGTACTCAGAGAAGTTTGTGGGATTAATGAA
GGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTT
TATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATT
ATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGA
TTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAAT
CATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAAC
GTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATT
CCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGT
TGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCAC
GATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAA
CTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCC
CGATTCGGTGGTAATAACAACATAGTGATAGTAATAAATATATAAAGATGGTTATTCTAC
ATTGG

consensusID : consensus_6916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 653
fasta sequence

                              [TCGAGGCCAGNATTCGGCACGAGGGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGG]

[+] EMBL CD080553             [TCGAGGCCAGNATTCGGCACGAGGGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGG]
[+] EMBL AA958276             [                                                                                       AGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGAT AAG AATTACATTATCTCCAGAAG AAGAATTAT AACTTCATCAAAGAAACTAAAG AAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTCCCTCTACTTCATCATCCTTACCAATTCC                                                                                                                                                                                                                                                         ]
[-] EMBL CD112654             [                                                                                                                                                                                                                                   GGCTGTATCTCCATTCTCTCTAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTACTCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTA                                                                                                                                                                       ]




>consensus_6916#1
TCGAGGCCAGNATTCGGCACGAGGGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAA
GTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGC
TGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAA
ACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCA
TTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGT
CCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAA
AACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTT
AGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCT
TCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAAT
CAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTG
CTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6916#0      ATTATGGACATCAAGGTTAATATCGACGGAGTACTCAGAGAAGTTTGTGGGATTAATGAA 60
consensus_6916#1      ----------TCGAGGCCAGNATT--CGG------CACGAGGGTTTGTGGGATTAATGAA 42
                                ** ***  *  **   ***      **     ******************

consensus_6916#0      GGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTT 120
consensus_6916#1      GGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTT 102
                      ************************************************************

consensus_6916#0      TATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATT 180
consensus_6916#1      TATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATT 162
                      ************************************************************

consensus_6916#0      ATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGA 240
consensus_6916#1      ATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGA 222
                      ************************************************************

consensus_6916#0      TTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAAT 300
consensus_6916#1      TTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAAT 282
                      ************************************************************

consensus_6916#0      CATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAAC 360
consensus_6916#1      CATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAAC 342
                      ************************************************************

consensus_6916#0      GTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATT 420
consensus_6916#1      GTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATT 402
                      ************************************************************

consensus_6916#0      CCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGT 480
consensus_6916#1      CCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGT 462
                      ************************************************************

consensus_6916#0      TGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCAC 540
consensus_6916#1      TGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCAC 522
                      ************************************************************

consensus_6916#0      GATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAA 600
consensus_6916#1      GATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAA 582
                      ************************************************************

consensus_6916#0      CTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCC 660
consensus_6916#1      CTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCC 642
                      ************************************************************

consensus_6916#0      CGATTCGGTGGTAATAACAACATAGTGATAGTAATAAATATATAAAGATGGTTATTCTAC 720
consensus_6916#1      CGATTCGGTGG------------------------------------------------- 653
                      ***********                                                 

consensus_6916#0      ATTGG 725
consensus_6916#1      -----