These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 599 fasta sequence [TTTCGGTCACGAGGGCCTTTTTGGCCTCCAATGAAATTATCAATACCTTTAATATCCTATCTTCTTTTTCCTTACATGAATTTGTTAATTGTCAACACTTAAACACATTTATTATATCTATTCATTATTCTATAATTAGCCCATCATATATACAGGTGAAACAAAACGGTATATTGTTTTGAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTTATTTTTCACCATTCGTAATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTTNTTTCTAGGCTTTTTT] [+] EMBL CD083232 [TTTCGGTCACGAGGGCCTTTTTGGCCTCCAATGAAATTATCAATACCTTTAATATCCTATCTTCTTTTTCCTTACATGAATTTGTTAATTGTCAACACTTAAACACATTTATTATATCTATTCATTATTCTATAATTAGCCCATCATATATACAGGTGAAACAAAACGGTATATTGTTTTGAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTTATTTTTCACCATTCGTAATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTTNTTTCTAGGCTTTTTT] [+] EMBL CD082940 [ cTTGAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTTATTTTTCACCATTCGTAATCTTACAATGCTGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT ] [-] EMBL CD134969 [ ATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTA ] consensusID : consensus_6923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [TNCGTGCACGACGGTTAAANCAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT] [+] EMBL CD081706 [TNCGTGCACGACGGTTAAANCAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6923#0 TTTCGGTCACGAGGGCCTTTTTGGCCTCCAATGAAATTATCAATACCTTTAATATCCTAT 60 consensus_6923#1 ------------------------------------------------------------ consensus_6923#0 CTTCTTTTTCCTTACATGAATTTGTTAATTGTCAACACTTAAACACATTTATTATATCTA 120 consensus_6923#1 ------------------------------------------------------------ consensus_6923#0 TTCATTATTCTATAATTAGCCCATCATATATACAGGTGAAACAAAACGGTATATTGTTTT 180 consensus_6923#1 ------------------------------------------------------------ consensus_6923#0 GAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTT 240 consensus_6923#1 ------------------------------------------------------------ consensus_6923#0 ATTTTTCACCATTCGTAATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCT 300 consensus_6923#1 ------------------------------------------------------------ consensus_6923#0 TACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATA 360 consensus_6923#1 ---------------------------------------------TNCGTGCACGACGGT 15 * * * consensus_6923#0 TTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTA 420 consensus_6923#1 TAAANCAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTA 75 * ** ******************************************************* consensus_6923#0 GTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACA 480 consensus_6923#1 GTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACA 135 ************************************************************ consensus_6923#0 TCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTG 540 consensus_6923#1 TCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTG 195 ************************************************************ consensus_6923#0 TGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTTNTTTCTAGGCTTTTTT 599 consensus_6923#1 TGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT---------------- 238 ******************************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||