cluster # 6923

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Schistosoma mansoni
cluster # 6923 cluster # 6923 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6923#0 length = 599 sequences # 3

consensus_6923#1 length = 238 sequences # 1

consensusID : consensus_6923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 599
fasta sequence

                              [TTTCGGTCACGAGGGCCTTTTTGGCCTCCAATGAAATTATCAATACCTTTAATATCCTATCTTCTTTTTCCTTACATGAATTTGTTAATTGTCAACACTTAAACACATTTATTATATCTATTCATTATTCTATAATTAGCCCATCATATATACAGGTGAAACAAAACGGTATATTGTTTTGAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTTATTTTTCACCATTCGTAATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTTNTTTCTAGGCTTTTTT]

[+] EMBL CD083232             [TTTCGGTCACGAGGGCCTTTTTGGCCTCCAATGAAATTATCAATACCTTTAATATCCTATCTTCTTTTTCCTTACATGAATTTGTTAATTGTCAACACTTAAACACATTTATTATATCTATTCATTATTCTATAATTAGCCCATCATATATACAGGTGAAACAAAACGGTATATTGTTTTGAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTTATTTTTCACCATTCGTAATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTTNTTTCTAGGCTTTTTT]
[+] EMBL CD082940             [                                                                                                                                                                                 cTTGAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTTATTTTTCACCATTCGTAATCTTACAATGCTGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT                ]
[-] EMBL CD134969             [                                                                                                                                                                                                                                                                 ATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCTTACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATATTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTA                                                                                                   ]




>consensus_6923#0
TTTCGGTCACGAGGGCCTTTTTGGCCTCCAATGAAATTATCAATACCTTTAATATCCTAT
CTTCTTTTTCCTTACATGAATTTGTTAATTGTCAACACTTAAACACATTTATTATATCTA
TTCATTATTCTATAATTAGCCCATCATATATACAGGTGAAACAAAACGGTATATTGTTTT
GAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTT
ATTTTTCACCATTCGTAATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCT
TACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATA
TTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTA
GTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACA
TCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTG
TGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTTNTTTCTAGGCTTTTTT

consensusID : consensus_6923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [TNCGTGCACGACGGTTAAANCAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT]

[+] EMBL CD081706             [TNCGTGCACGACGGTTAAANCAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT]




>consensus_6923#1
TNCGTGCACGACGGTTAAANCAATGAATTTAAAGCAAATGATATATTCTATATACCTATA
CATATATGAGTTTTAGTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCT
ACGTATATATATACATCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATT
CCATGTCTACGTGTGTGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6923#0      TTTCGGTCACGAGGGCCTTTTTGGCCTCCAATGAAATTATCAATACCTTTAATATCCTAT 60
consensus_6923#1      ------------------------------------------------------------
                                                                                  

consensus_6923#0      CTTCTTTTTCCTTACATGAATTTGTTAATTGTCAACACTTAAACACATTTATTATATCTA 120
consensus_6923#1      ------------------------------------------------------------
                                                                                  

consensus_6923#0      TTCATTATTCTATAATTAGCCCATCATATATACAGGTGAAACAAAACGGTATATTGTTTT 180
consensus_6923#1      ------------------------------------------------------------
                                                                                  

consensus_6923#0      GAGTTCTTTTTGTTTTGGTATTCTTAGTGAACTACTGATATATATGTACTGGACTTTTTT 240
consensus_6923#1      ------------------------------------------------------------
                                                                                  

consensus_6923#0      ATTTTTCACCATTCGTAATATTACAATGTAGCACCTTAAATTATTCATATTAATAAATCT 300
consensus_6923#1      ------------------------------------------------------------
                                                                                  

consensus_6923#0      TACATAGACGCATATTATTCTATTTATACCCTTTAAATCATTCATAATTTATAGACCATA 360
consensus_6923#1      ---------------------------------------------TNCGTGCACGACGGT 15
                                                                       *  *   *   

consensus_6923#0      TTAAACAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTA 420
consensus_6923#1      TAAANCAATGAATTTAAAGCAAATGATATATTCTATATACCTATACATATATGAGTTTTA 75
                      * ** *******************************************************

consensus_6923#0      GTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACA 480
consensus_6923#1      GTTCAATTTAAATTACATTGTACTTTTCTATTGCATACATTTTCTACGTATATATATACA 135
                      ************************************************************

consensus_6923#0      TCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTG 540
consensus_6923#1      TCTATATATATTTTGTATTACTTCTTGACGATGTCTTCATTTATTCCATGTCTACGTGTG 195
                      ************************************************************

consensus_6923#0      TGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTTNTTTCTAGGCTTTTTT 599
consensus_6923#1      TGTATGTATGTATGTACACGTGCGTGCTACGTGATTTGGAGTT---------------- 238
                      *******************************************