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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence
[CCCTCGAGCCAAAAATTCGGCACGAGGGAAATTGTTCAGCCGGGGAGTTTGAATTTCTCCGTAATCAGCTGACTATGTCCAGCGATAATAAGAACCAAAATGAGGTGGAGGTTATGGAGTACACAACTGTTAAGGCTAGCTACGAGTCTCTGAACAAACGATACAGACGCAATCACCGTGACATGGAGAAAGGCATAGCTGCTTTAAATAAGTCTCTTGACGAGTTGGAAAATGCAACGGACATTACAAAAGCTACAGCAGCACTCAGTAGAGTTATAGAAACCGTTTGTGGCGTGAAACGCAAAGCTGAATATGTATGCATTGAGGAAAGAAAGCTGTTGAAATCATGTAAACGCAGAATCGGGCACCTCAGTCAACTGTGTTTGCTTGATAGTGGAGTGTTTACTCGGACTTCAGATGAGCTACATTTCAACGCTGGAAATAATCAAAAGTCTGAAGAATCAATTTCCAAAGTTAATAGCAGTGAATCAGACACTACACTTAAACGCCGTTCTACTTATTCTGTTGATGAACGCGCACTTTGTCTAGCAAGATTTCAAAGACACTTGACAGATTATCTTTTTACAAGTGGTCAACCTTTATCGGCTTTGAAATTTGCTCAGGAAAAAGCCGAGCTTGGCGATCTATGTATGATGGAAG-TTNTTGATGAAGCTGTGTCTATTG]
[+] EMBL CD082021 [CCCTCGAGCCAAAAATTCGGCACGAGGGAAATTGTTCAGCCGGGGAGTTTGAATTTCTCCGTAATCAGCTGACTATGTCCAGCGATAATAAGAACCAAAATGAGGTGGAGGTTATGGAGTACACAACTGTTAAGGCTAGCTACGAGTCTCTGAACAAACGATACAGACGCAATCACCGTGACATGGAGAAAGGCATAGCTGCTTTAAATAAGTCTCTTGACGAGTTGGAAAATGCAACGGACATTACAAAAGCTACAGCAGCACTCAGTAGAGTTATAGAAACCGTTTGTGGCGTGAAACGCAAAGCTGAATATGTATGCATTGAGGAAAGAAAGCTGTTGAAATCATGTAAACGCAGAATCGGGCACCTCAGTCAACTGTGTTTGCTTGATAGTGGAGTGTTTACTCGGACTTCAGATGAGCTACATTTCAACGCTGGAAATAATCAAAAGTCTGAAGAATCAATTTCCAAAGTTAATAGCAGTGAATCAGACACTACACTTAAACGCCGTTCTACTTATTCTGTTGATGAACGCGCACTTTGTCTAGCAAGATTTCAAAGACACTTGACAGATTATCTTTTTACAAGTGGTCAACCTTTATCGGCTTTGAAATTTGCTCAGGAAAAAGCCGAGCTTGGCGATCTATGTATGATGGAAG TTNTTGATGAAGCTGTGTCTATTG]
[+] EMBL CD186879 [ ATTTCTCCGTAATCAGCTGACTATGTCCAGCGATAATAAGAACCAAAATGAGGTGGAGGTTATGGAGTACACAACTGTTAAGGCTAGCTACGAGTCTCTGAACAAACGATACAGACGCAATCACCGTGACATGGAGAAAGGCATAGCTGCCTTAAATAAGTCTCTTGACGAGTTGGAAAATGCAACGGACATTACAAAAGCTACAGCAGCACTCGGTAGAGTTATAGAAACCGTTTGTGGCGTGAAACGCAAAGCTGAATATGTATGCATTGAGGAAAGAAAGCTGTTGAAATCATGTAAACGCAGAATCGGGCACCTCAGTCAACTGTGTTTGCTTGATAGTGGAGTGTTTACTCGGACTTCAGATGAGCTACATTTCAACGCTGGAAATAATCAAAAGTCTGAAGAATCAATTTCCA ]
[-] EMBL CD198239 [ AAAGAAAGCTGTTGAAATCATGTAACCGCAGAATCGGGCACCTCAGTCAACTGTGTTTGCTTGATAGTGGAGTGTTTACTCGGACTTCAGATGAGCTACATTTCAACGCTGGAAATAATCAAAAGTCTGAAGAATCAATTTCCAAAGTTAATAGCAGTGAATCAGACACTACACTTAAACGCCGTTCTACTTATTCTGTTGATGAACGCGCACTTTGTCTAGCAAGATTTCAAAGACACTTGACAGATTATCTTTTTACAAGTGGTCAACCTTTATCGGCTTTGAAATTTGCTCAGGAAAAAGCCGAGCTTGGCGATCTATGTATGATGGAAGATTTTTGATGAAGCTGTGTC ]
consensusID : consensus_6929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[TGTTCAGCCGGGGAGTTTGAATTTCTCCGTAATCAGCTGACTATGTCCAGCGATAATAAGAACCAAAATGAGGTGGAGGTTATGGAGTACACAACTGTTAAGGTATAATGACTCAGAAATGTAAGCTTTCTTTTAAAGGCTAGCTACGAGTCTCTGAACAAACGATACAGACGCAATCACCGTGACATGGAGAAAGGCATAGCTGCTTTAAATAAGTCTCTTGACGAGTTGGAAAATGCAACGGACATTACAAAAGCTACAGCAGCACTCAGTAGAGTTATAGAAACCGTTTGTGGCGTGAAACGCAAAGCTGAATATGTATGCATTGAGGAAAGAAAGCTGTTGAAATCATGTAAACGCAGAATCGGGCACCTCAGTCAACTGTGTTTGCTTGATAGTGGAGTGTT]
[+] EMBL CD201460 [TGTTCAGCCGGGGAGTTTGAATTTCTCCGTAATCAGCTGACTATGTCCAGCGATAATAAGAACCAAAATGAGGTGGAGGTTATGGAGTACACAACTGTTAAGGTATAATGACTCAGAAATGTAAGCTTTCTTTTAAAGGCTAGCTACGAGTCTCTGAACAAACGATACAGACGCAATCACCGTGACATGGAGAAAGGCATAGCTGCTTTAAATAAGTCTCTTGACGAGTTGGAAAATGCAACGGACATTACAAAAGCTACAGCAGCACTCAGTAGAGTTATAGAAACCGTTTGTGGCGTGAAACGCAAAGCTGAATATGTATGCATTGAGGAAAGAAAGCTGTTGAAATCATGTAAACGCAGAATCGGGCACCTCAGTCAACTGTGTTTGCTTGATAGTGGAGTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6929#0 CCCTCGAGCCAAAAATTCGGCACGAGGGAAATTGTTCAGCCGGGGAGTTTGAATTTCTCC 60
consensus_6929#1 --------------------------------TGTTCAGCCGGGGAGTTTGAATTTCTCC 28
****************************
consensus_6929#0 GTAATCAGCTGACTATGTCCAGCGATAATAAGAACCAAAATGAGGTGGAGGTTATGGAGT 120
consensus_6929#1 GTAATCAGCTGACTATGTCCAGCGATAATAAGAACCAAAATGAGGTGGAGGTTATGGAGT 88
************************************************************
consensus_6929#0 ACACAACTGTTAAGG------------------------------------CTAGCTACG 144
consensus_6929#1 ACACAACTGTTAAGGTATAATGACTCAGAAATGTAAGCTTTCTTTTAAAGGCTAGCTACG 148
*************** *********
consensus_6929#0 AGTCTCTGAACAAACGATACAGACGCAATCACCGTGACATGGAGAAAGGCATAGCTGCTT 204
consensus_6929#1 AGTCTCTGAACAAACGATACAGACGCAATCACCGTGACATGGAGAAAGGCATAGCTGCTT 208
************************************************************
consensus_6929#0 TAAATAAGTCTCTTGACGAGTTGGAAAATGCAACGGACATTACAAAAGCTACAGCAGCAC 264
consensus_6929#1 TAAATAAGTCTCTTGACGAGTTGGAAAATGCAACGGACATTACAAAAGCTACAGCAGCAC 268
************************************************************
consensus_6929#0 TCAGTAGAGTTATAGAAACCGTTTGTGGCGTGAAACGCAAAGCTGAATATGTATGCATTG 324
consensus_6929#1 TCAGTAGAGTTATAGAAACCGTTTGTGGCGTGAAACGCAAAGCTGAATATGTATGCATTG 328
************************************************************
consensus_6929#0 AGGAAAGAAAGCTGTTGAAATCATGTAAACGCAGAATCGGGCACCTCAGTCAACTGTGTT 384
consensus_6929#1 AGGAAAGAAAGCTGTTGAAATCATGTAAACGCAGAATCGGGCACCTCAGTCAACTGTGTT 388
************************************************************
consensus_6929#0 TGCTTGATAGTGGAGTGTTTACTCGGACTTCAGATGAGCTACATTTCAACGCTGGAAATA 444
consensus_6929#1 TGCTTGATAGTGGAGTGTT----------------------------------------- 407
*******************
consensus_6929#0 ATCAAAAGTCTGAAGAATCAATTTCCAAAGTTAATAGCAGTGAATCAGACACTACACTTA 504
consensus_6929#1 ------------------------------------------------------------
consensus_6929#0 AACGCCGTTCTACTTATTCTGTTGATGAACGCGCACTTTGTCTAGCAAGATTTCAAAGAC 564
consensus_6929#1 ------------------------------------------------------------
consensus_6929#0 ACTTGACAGATTATCTTTTTACAAGTGGTCAACCTTTATCGGCTTTGAAATTTGCTCAGG 624
consensus_6929#1 ------------------------------------------------------------
consensus_6929#0 AAAAAGCCGAGCTTGGCGATCTATGTATGATGGAAGTTNTTGATGAAGCTGTGTCTATTG 684
consensus_6929#1 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||