cluster # 6974

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Schistosoma mansoni
cluster # 6974 cluster # 6974 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6974#0 length = 575 sequences # 3

consensus_6974#1 length = 206 sequences # 1

consensusID : consensus_6974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 575
fasta sequence

                              [ACTATCAAATGTGATTACTAAGTTTAGCATAAACCTATTATGTCAGACCCAGGTCGTAGCATCAATGTAGTTTTTGGGGGTCAAAATTATGTGGTTCCTTTACCATTGAGTAGCGACGCGACACTACTGGACTTAATGAAGTCAGTGGACTCTGTTTTACACATCCCATTTGATAAACAAAGAATAATATACAAAGGAAGATCTCTTACAGATCCTGATGCACTAATTTCTTCATCGGGTCTCACTCCTGGGTCTAAAGTTATGATTCTTGGTTCAGTTGAAAAACTCAATCCGGATGAGGCCGTAAAACTTGTCAAGGCAAAAGACACATCTGATACAGTCGACTTGCAACTAAAAGACCTCACAGACAAGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACTGCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTGGATTCTGTACGGTTGCCATACAACTGCGAAAATGAACGCGCTTGTCGAAAAAGGCTAGTGGACACAATACAAGAGTTTCTTGTACAGGCGGACAA]

[+] EMBL AI976967             [ACTATCAAATGTGATTACTAAGTTTAGCATAAACCTATTATGTCAGACCCAGGTCGTAGCATCAATGTAGTTTTTGGGGGTCAAAATTATGTGGTTCCTTTACCATTGAGTAGCGACGCGACACTACTGGACTTAATGAAGTCAGTGGACTCTGTTTTACACATCCCATTTGATAAACAAAGAATAATATACAAAGGAAGATCTCTTACAGATCCTGATGCACTAATTTCTTCATCGGGTCTCACTCCTGGGTCTAAAGTTATGATTCTTGGTTCAGTTGAAAAACTCAATCCGGATGAGGCCGTAAAACTTGTCAAGGCAAAAGACACATCTGATACAGTCGACTTGCAACTAAAAGACCTCACAGACAAGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACTGCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTGGATTCTGTACGGTTGCCATACAACTGCGAAAATGAACGCGCTTGTCGAAAAAGGCTAGTGGACACAATACAAGAGTTTCTTGTACAGGCGGACAA]
[+] EMBL CD202571             [                                                                                                                                                                                                        ATCTCTTACAGATCCTGATGCACTAATTTCTTCATCGGGTCTCACTCCTGGGTCTAACGTTATGATTCTTGGTTCACTTGAAAAACTCAATCCGGATGAGGCCGTAAAACTTGTCAAGGCGGAAGACACATCTGATACAGTCGACTTGCAACTAAAAGACCTCACAGACAAGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACTGCACACGTATAGTCTACAATTGACATAATGGAGCCGTG                                                                                                                     ]
[-] EMBL CD191816             [                                                                                                                                                                                                                                                                              GGTTCAGTTGAAAAACTCAATCCGGATGAGGCCGTAAAACTTGTCAAGGCAAAAGACACATCTGATACAGTCGACTTGCAACTAAAAGACCTCACAGACAAGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACTGCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTGGATTCTGTACGGTTGCCATACAACT                                                                      ]




>consensus_6974#0
ACTATCAAATGTGATTACTAAGTTTAGCATAAACCTATTATGTCAGACCCAGGTCGTAGC
ATCAATGTAGTTTTTGGGGGTCAAAATTATGTGGTTCCTTTACCATTGAGTAGCGACGCG
ACACTACTGGACTTAATGAAGTCAGTGGACTCTGTTTTACACATCCCATTTGATAAACAA
AGAATAATATACAAAGGAAGATCTCTTACAGATCCTGATGCACTAATTTCTTCATCGGGT
CTCACTCCTGGGTCTAAAGTTATGATTCTTGGTTCAGTTGAAAAACTCAATCCGGATGAG
GCCGTAAAACTTGTCAAGGCAAAAGACACATCTGATACAGTCGACTTGCAACTAAAAGAC
CTCACAGACAAGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACT
GCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTG
GATTCTGTACGGTTGCCATACAACTGCGAAAATGAACGCGCTTGTCGAAAAAGGCTAGTG
GACACAATACAAGAGTTTCTTGTACAGGCGGACAA

consensusID : consensus_6974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [AGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACTGCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTGGATTCTGTACGGTTGCCATACAACTGCGAAAATGACGCGCTTGTCGAAAAAGGCTAGTGGTCAGTGTCATCATACGCTTTCAAGTGTCGGGGATCC]

[-] EMBL CD061521             [AGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACTGCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTGGATTCTGTACGGTTGCCATACAACTGCGAAAATGACGCGCTTGTCGAAAAAGGCTAGTGGTCAGTGTCATCATACGCTTTCAAGTGTCGGGGATCC]




>consensus_6974#1
AGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACTGCACACGTAA
AGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTGGATTCTGTAC
GGTTGCCATACAACTGCGAAAATGACGCGCTTGTCGAAAAAGGCTAGTGGTCAGTGTCAT
CATACGCTTTCAAGTGTCGGGGATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6974#0      ACTATCAAATGTGATTACTAAGTTTAGCATAAACCTATTATGTCAGACCCAGGTCGTAGC 60
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      ATCAATGTAGTTTTTGGGGGTCAAAATTATGTGGTTCCTTTACCATTGAGTAGCGACGCG 120
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      ACACTACTGGACTTAATGAAGTCAGTGGACTCTGTTTTACACATCCCATTTGATAAACAA 180
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      AGAATAATATACAAAGGAAGATCTCTTACAGATCCTGATGCACTAATTTCTTCATCGGGT 240
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      CTCACTCCTGGGTCTAAAGTTATGATTCTTGGTTCAGTTGAAAAACTCAATCCGGATGAG 300
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      GCCGTAAAACTTGTCAAGGCAAAAGACACATCTGATACAGTCGACTTGCAACTAAAAGAC 360
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      CTCACAGACAAGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACT 420
consensus_6974#1      ----------AGCTAGATACTATTTTGTCTCAAAGTGATTCTGACAGTTTAGAGGTAACT 50
                                **************************************************

consensus_6974#0      GCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTG 480
consensus_6974#1      GCACACGTAAAGTCTACAATTGACATAATGGAGCAGTGCATGCGTACTCTTGAGCTTCTG 110
                      ************************************************************

consensus_6974#0      GATTCTGTACGGTTGCCATACAACTGCGAAAATGAACGCGCTTGTCGAAAAAGGCTAGTG 540
consensus_6974#1      GATTCTGTACGGTTGCCATACAACTGCGAAAATGA-CGCGCTTGTCGAAAAAGGCTAGTG 169
                      *********************************** ************************

consensus_6974#0      GACA---CAATACAAGAGTTTCTTGTACAGGCGGACAA 575
consensus_6974#1      GTCAGTGTCATCATACGCTTTCAAGTGTCGGGGATCC- 206
                      * **     **   *   ****  **   ** *  *