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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 748 fasta sequence
[TAACCATCAACTGTAAATCATAATTCTAATTCCTCATACTGGTTTATAACCTTCATTTGGACCTAGTTACTAGATGGACATGGTTAATCTAGCGTCACTCAAAGGTCGTCCATAAATCAAAGTCTCACCGAAATTTCTTTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGATTACTTCACTGTTTAATATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGTCTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAACCATTTTTCCTTTTTGATTATTTTATCCACTCGATTGTCCCATATTTTTGCTTTGTTTATTCGATTGAATCCCATTTCGTGTAATATTTTACAAACGTCATCACTGTGTTAAAGGATATGAGATTAAAAATCACCTTGTTTGATAATTCATCTGAATGAAATTTCATTCATTTGGTGTAATGCTTTCCGATTATCTCAAGTCAAGTCTAATGGTTTGGCAATGAAACATCTTGCTTAAATAATTTCTTTTAAATTATCCTAACAGAACTATTTAAATTGTCTAATTATTATCTTTTTTCTTCATTGTCTTCAGAAATAGTCAGGCTGTAAATTTCGATTCTCGTGAAATGCACATGGCCGTTCAACAAGAATTACGACTCCGTAATCGTACCATTCATACTGCTGCTTCAGCTTCTGGTGGGTCCATTTCTTCAATTAGTTCGGCTGAT]
[-] EMBL CD131926 [TAACCATCAACTGTAAATCATAATTCTAATTCCTCATACTGGTTTATAACCTTCATTTGGACCTAGTTACTAGATGGACATGGTTAATCTAGCGTCACTCAAAGGTCGTCCATAAATCAAAGTCTCACCGAAATTTCTTTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGATTACTTCACTGTTTAATATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGTCTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAACCATTTTTCCTTTTTGA ]
[-] EMBL CD131929 [ TTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGATTACTTCACTGTTTAATATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGTCTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAc ]
[+] EMBL CD165752 [ AAATCTTCCACATCATTTTCTGTCTCAGAACTGTGTGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAACCATTTTTCCTTTTTGATTATTTTATCCACTCGATTGTCCCATATTTTTGCTTTGTTTATTCGATTGAATCCCATTTCGTGTAATATTTTACAAACGTCATCACTGTGTTAAAGGATATGAGATTAAAAATCACCTTGTTTGATAATTCATCTGAATGAAATTTCATTCATTTGGTGTAATGCTTTCCGATTATCTCAAGTCAAGTCTAATGGTTTGGCAATGAAACATCTTGCTTAAATAATTTCTTTTAAATTATCCTAACAGAACTATTTAAATTGTCTAATTATTATCTTTTTTCTTCATTGTCTTCAGAAATAGTCAGGCTGTAAATTTCGATTCTCGTGAAATGCACATGGCCGTTCAACAAGAATTACGACTCCGTAATCGTACCATTCATACTGCTGCTTCAGCTTCTGGTGGGTCCATTTCTTCAATTAGTTCGGCTGAT]
consensusID : consensus_6980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[GACAAATCATAAAGGACCTTTTCTGTGTCGGTGAAATTACAATTTATGGTCGACATTTGGGGGATGTAAAAGTGACCTTGAGAATGTCCATCTACTAGGACTAAATGAGAGCGATAAACCAGTGTGAGGAATTAGAATTATGATTTACAGTTGATGGTTAGGGTTAGTAATCAGATTTAGAGTTTTCATAACGAAGTGGCATTAGCTGAAACTCCAGAACGTCATTTAGCCAAACAGATGAATGAATTTCGCACCAGAATACAAGACCTGTCATCCTAAATCTGATCGGTTTGACCGTAAATTAGAGTCTCGCCTGTGTGTCGATAAATAAGAAGAACGAATTTTCGCATTAAAATAGCGCACAGAAAATCCAACTCAGTGTTATCATTTCCACTAGTAATGCTTACTAGAGAACGTTTTCTCAAAAAAACTTTTAAGAAACGAAAACTGTTATGACAAATTACTACAAATGAATGTTGATGAAATTGATTCCCAATAAATAATTTCATA]
[+] EMBL CD087641 [GACAAATCATAAAGGACCTTTTCTGTGTCGGTGAAATTACAATTTATGGTCGACATTTGGGGGATGTAAAAGTGACCTTGAGAATGTCCATCTACTAGGACTAAATGAGAGCGATAAACCAGTGTGAGGAATTAGAATTATGATTTACAGTTGATGGTTAGGGTTAGTAATCAGATTTAGAGTTTTCATAACGAAGTGGCATTAGCTGAAACTCCAGAACGTCATTTAGCCAAACAGATGAATGAATTTCGCACCAGAATACAAGACCTGTCATCCTAAATCTGATCGGTTTGACCGTAAATTAGAGTCTCGCCTGTGTGTCGATAAATAAGAAGAACGAATTTTCGCATTAAAATAGCGCACAGAAAATCCAACTCAGTGTTATCATTTCCACTAGTAATGCTTACTAGAGAACGTTTTCTCAAAAAAACTTTTAAGAAACGAAAACTGTTATGACAAATTACTACAAATGAATGTTGATGAAATTGATTCCCAATAAATAATTTCATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6980#0 TAACCATCAACTGTAAATCATAATTCTAATTCCTCATACTGGTTTATAACCTTCATTTGG 60
consensus_6980#1 -----------GACAAATCATAAAGGACCTTTTCTGTGTCGGT--GAAATTACAATTTA- 46
********* ** * *** ** ****
consensus_6980#0 ACCTAGTTACTAGATGGACATGGTTAATCTAGCGTCACTCAAAGGTCGTCCA-TAAATCA 119
consensus_6980#1 ---TGGTCGACATTTGGGGGATGTAAAAGTGACCTTGAG-AATGTCCATCTACTAGGACT 102
* ** * *** ** ** * * * ** * * ** * ** *
consensus_6980#0 AAGTCTCACCGAAATTTCTTTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGAT 179
consensus_6980#1 AAATGAGAGCGATAAACCAGTGTGAGGAATT----AGAAT---TATGATTTACAGTTGAT 155
** * * *** * * * ** **** **** * **** ****
consensus_6980#0 TACTTCACTGTTTAAT-ATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGT 238
consensus_6980#1 GGTTAGGGTTAGTAATCAGATTTAGAGTTTTCATAACGAAGTG---GCATTAGCTGAAAC 212
* * **** * ** * * * * ** *** * *
consensus_6980#0 CTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGA 298
consensus_6980#1 TCCAGAAC-----GTCATTTAGCCAAACAG-ATGAATGAATT-TCGCACCAGAATACAAG 265
****** ** * ** * * * ** ** * * * * ***
consensus_6980#0 ACCATTTTTCCTT--TTTGATTATTTTATCCACTCGATTGTCCCATATTTTTGCTTTGTT 356
consensus_6980#1 ACCTGTCATCCTAAATCTGATCGGTTTGACCGTAAATTAGAGTCTCGCCTGTGTGTCGAT 325
*** * **** * **** *** ** * * * * ** * * *
consensus_6980#0 TATTCGATTGAATCCCATTTCGTGT---AATATTTTACAAACGTCATCACTGTGTTAAAG 413
consensus_6980#1 AAATAAGAAGAACGAATTTTCGCATTAAAATAGCGCACAGAAAATCCAACTCAGTGTTAT 385
* * *** ***** * **** *** * *** ** *
consensus_6980#0 GATATGAGATTAAAAATCACCTTGTTTGATAAT-TCATCTGAATGAAATTTCATTCATTT 472
consensus_6980#1 CATTTCC-ACTAGTAATG--CTTACTAGAGAACGTTTTCTCAAAAAAACTT---TTAAGA 439
** * * ** *** *** * ** ** * *** ** *** ** * *
consensus_6980#0 GGTGTAATGCTTTCCGATTATCTCAAGTCAAGTCTAATGGTTTGGCAATGAAACATCTTG 532
consensus_6980#1 AACGAAAA------CTGTTATGACAAATTACTACAAATGAAT-GTTGATGAAATTGATTC 492
* ** * **** *** * * * **** * * ****** **
consensus_6980#0 CT--TAAATAATTTCTTTTAAATTATCCTAACAGAACTATTTAAATTGTCTAATTATTAT 590
consensus_6980#1 CCAATAAATAATTTCATA------------------------------------------ 510
* *********** *
consensus_6980#0 CTTTTTTCTTCATTGTCTTCAGAAATAGTCAGGCTGTAAATTTCGATTCTCGTGAAATGC 650
consensus_6980#1 ------------------------------------------------------------
consensus_6980#0 ACATGGCCGTTCAACAAGAATTACGACTCCGTAATCGTACCATTCATACTGCTGCTTCAG 710
consensus_6980#1 ------------------------------------------------------------
consensus_6980#0 CTTCTGGTGGGTCCATTTCTTCAATTAGTTCGGCTGAT 748
consensus_6980#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||