cluster # 6987

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Schistosoma mansoni
cluster # 6987 cluster # 6987 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6987#0 length = 827 sequences # 2

consensus_6987#1 length = 423 sequences # 2

consensusID : consensus_6987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 827
fasta sequence

                              [GCACTGTGCGGTTTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAACTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATCTCATCGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTTGCGACGACTACCAGTCTCATTACGGCTGCGACGGCGGGCGCCTGTCTCG-GTTTTTGCCCCACAACTGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCTTATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAGCACGGGGGCGGCGGATTGGTCCCCGCTTACTTGCCAATCGTCGTGCCACTGATGGTGCTGGCCATCCCTTTTCTGGACCTTGTCATGGGCTATGTCCGGAGGACATGGCGAGGGACGTGGTTCTTCGTTGCGGACAATGCAACACCTTCATCACCGCTTATTGCAACGAGGCCACTCTCACATGCGGGCTGTCTTGCTGATGTATCTATGGACCACCGTGCTCACCTTTGGGACGGTGTTTATTGGCCTGGAACAAACATGGTGGACGATCGTAATCGTGGTAACGGGACCTCGGAATGTGCGCTACTCCTCACTATGGCGAA]

[+] EMBL CD087696             [GCACTGTGCGGTTTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAACTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATCTCATCGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTTGCGACGACTACCAGTCTCATTACGGCTGCGACGGCGGGCGCCTGTCTCG GTTTTTGCCCCACAACTGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCTTATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAGCACGGGGGCGGCGGATTGGTCCCC                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD112550             [                                                                                                                                                                                                                                                                                                                                                                                 TGTCTCGCTTTTTTGCCCCACAACCGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCTTATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAGCAC GGGGCGGCGGATTGGTCCCCGCTTACTTGCCAATCGTCGTGCCACTGATGGTGCTGGCCATCCCTTTTCTGGACCTTGTCATGGGCTATGTCCGGAGGACATGGCGAGGGACGTGGTTCTTCGTTGCGGACAATGCAACACCTTCATCACCGCTTATTGCAACGAGGCCACTCTCACATGCGGGCTGTCTTGCTGATGTATCTATGGACCACCGTGCTCACCTTTGGGACGGTGTTTATTGGCCTGGAACAAACATGGTGGACGATCGTAATCGTGGTAACGGGACCTCGGAATGTGCGCTACTCCTCACTATGGCGAA]




>consensus_6987#0
GCACTGTGCGGTTTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCC
TTGGCCAAGGCAACTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGA
ATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTG
GTGACGGTGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATCTCATCGATGGACTTGAC
GGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTG
CTGGCTCACGAACAGGACTTTGTTGTTGCGACGACTACCAGTCTCATTACGGCTGCGACG
GCGGGCGCCTGTCTCGGTTTTTGCCCCACAACTGGCATCCGGCGAGGATGTTCATGGGTG
ATTCCGGAGCTCTGCTACTTGGCTTATTGCTAGCTACCTCGACGATCTCGTTGACCGGAC
AGATCGATTCGACGGCTCTGACAGCACGGGGGCGGCGGATTGGTCCCCGCTTACTTGCCA
ATCGTCGTGCCACTGATGGTGCTGGCCATCCCTTTTCTGGACCTTGTCATGGGCTATGTC
CGGAGGACATGGCGAGGGACGTGGTTCTTCGTTGCGGACAATGCAACACCTTCATCACCG
CTTATTGCAACGAGGCCACTCTCACATGCGGGCTGTCTTGCTGATGTATCTATGGACCAC
CGTGCTCACCTTTGGGACGGTGTTTATTGGCCTGGAACAAACATGGTGGACGATCGTAAT
CGTGGTAACGGGACCTCGGAATGTGCGCTACTCCTCACTATGGCGAA

consensusID : consensus_6987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 423
fasta sequence

                              [CGGCTGGGGGGAGTGGCCTTGGCGTGTCTGCTGGCCCGCAATATGCCTTTCCTGGGCCGCCATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTGCTGCCTTGGCCAAGGCAGCTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGAGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATTTCA-TTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTT]

[+] EMBL CD087686             [CGGCTGGGGGGAGTGGCCTTGGCGTGTCTGCTGGCCCGCAATATGCCTTTCCTGGGCCGCCATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTGCTGCCTTGGCCAAGGCAGCTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGAGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATTTCA TTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTTGTT]
[+] EMBL CD150603             [                                    ccatgTATG ATTTCCTGGGCCGCCATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCTGTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAGCTGGCCAGGTATTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAACTCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTGTGCGCCAATGCGGTGAATTTCATTTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCCATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGC                          ]




>consensus_6987#1
CGGCTGGGGGGAGTGGCCTTGGCGTGTCTGCTGGCCCGCAATATGCCTTTCCTGGGCCGC
CATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCT
GTGGGTGTCGTCGATGACCTGCTCGACCTTGCTGCCTTGGCCAAGGCAGCTGGCCAGGTA
TTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAAC
TCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGAGTTCTTCATTGTGTTG
TGCGCCAATGCGGTGAATTTCATTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCC
ATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTT
GTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6987#0      ------------------------------------------------------------
consensus_6987#1      CGGCTGGGGGGAGTGGCCTTGGCGTGTCTGCTGGCCCGCAATATGCCTTTCCTGGGCCGC 60
                                                                                  

consensus_6987#0      -----------------------------GCACTGTGCGGTT-------TGATCTGCGCT 24
consensus_6987#1      CATCTTCTGGTTGCTGACGACGCGTTGACGATCTGTCTGGCTGGTGTAGTGATCTGCGCT 120
                                                   *  ****  ** *       ***********

consensus_6987#0      GTGGGTGTCGTCGATGACCTGCTCGACCTTCCTGCCTTGGCCAAGGCAACTGGCCAGGTA 84
consensus_6987#1      GTGGGTGTCGTCGATGACCTGCTCGACCTTGCTGCCTTGGCCAAGGCAGCTGGCCAGGTA 180
                      ****************************** ***************** ***********

consensus_6987#0      TTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAAC 144
consensus_6987#1      TTAGCGGCCGGCATCGTCGTCACGGGCGGAGTGCGAATGTTTTGGATCCCGCTGCCGAAC 240
                      ************************************************************

consensus_6987#0      TCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGTGTTCTTCATTGTGTTG 204
consensus_6987#1      TCCATCATTGCTTTGGGGACGCCTACTTCGATCTTGGTGACGGAGTTCTTCATTGTGTTG 300
                      ******************************************* ****************

consensus_6987#0      TGCGCCAATGCGGTGAATCTCATCGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCC 264
consensus_6987#1      TGCGCCAATGCGGTGAATTTCATTGATGGACTTGACGGCCTGGCATCCGGTGTGGTGGCC 360
                      ****************** **** ************************************

consensus_6987#0      ATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTT 324
consensus_6987#1      ATCGGGTCCTTGGCTTTCTTCTCATACACCTACCTGCTGGCTCACGAACAGGACTTTGTT 420
                      ************************************************************

consensus_6987#0      GTTGCGACGACTACCAGTCTCATTACGGCTGCGACGGCGGGCGCCTGTCTCGGTTTTTGC 384
consensus_6987#1      GTT--------------------------------------------------------- 423
                      ***                                                         

consensus_6987#0      CCCACAACTGGCATCCGGCGAGGATGTTCATGGGTGATTCCGGAGCTCTGCTACTTGGCT 444
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      TATTGCTAGCTACCTCGACGATCTCGTTGACCGGACAGATCGATTCGACGGCTCTGACAG 504
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      CACGGGGGCGGCGGATTGGTCCCCGCTTACTTGCCAATCGTCGTGCCACTGATGGTGCTG 564
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      GCCATCCCTTTTCTGGACCTTGTCATGGGCTATGTCCGGAGGACATGGCGAGGGACGTGG 624
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      TTCTTCGTTGCGGACAATGCAACACCTTCATCACCGCTTATTGCAACGAGGCCACTCTCA 684
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      CATGCGGGCTGTCTTGCTGATGTATCTATGGACCACCGTGCTCACCTTTGGGACGGTGTT 744
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      TATTGGCCTGGAACAAACATGGTGGACGATCGTAATCGTGGTAACGGGACCTCGGAATGT 804
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      GCGCTACTCCTCACTATGGCGAA 827
consensus_6987#1      -----------------------