These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 466 fasta sequence [GTCGATCTAGAGGATACCCCATCAACTCTCGGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATGAGGTACAGTATAAC] [+] EMBL CD061705 [GTCGATCTAGAGGATACCCCATCAACTCTCGGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATGAG ] [+] EMBL CD061808 [ aCCATCAACTCTCGGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATGAG ] [-] EMBL CD061758 [ GGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACC AAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTAC TACAATCATGCAGTACAGTATAAC] consensusID : consensus_6994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [ATGTAATACTGAATGGTGGGAATGTATGCTTAAAAAACGTATCAATAGTTCAATGAATTGAAACTTTTATTCGCGGTTTTCTAACAGTTTATACACTGAGTAGTATTCGCCGACGCTGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGTTGATTCAGATTAACCAGCGTGTTAGTGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACCGCCACATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACACCAGAGCGGGCCGG] [-] EMBL CD200803 [ATGTAATACTGAATGGTGGGAATGTATGCTTAAAAAACGTATCAATAGTTCAATGAATTGAAACTTTTATTCGCGGTTTTCTAACAGTTTATACACTGAGTAGTATTCGCCGACGCTGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGTTGATTCAGATTAACCAGCGTGTTAGTGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACCGCCACATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACACCAGAGCGGGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6994#0 ------------------------------------------------------------ consensus_6994#1 ATGTAATACTGAATGGTGGGAATGTATGCTTAAAAAACGTATCAATAGTTCAATGAATTG 60 consensus_6994#0 --------------------------GTCGATCTAGAGGATACC--CCATCAACTCTCGG 32 consensus_6994#1 AAACTTTTATTCGCGGTTTTCTAACAGTTTATACACTGAGTAGTATTCGCCGACGCT--G 118 ** ** * * ** * * ** ** * consensus_6994#0 GAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAG 92 consensus_6994#1 GAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAG 178 ************************************************************ consensus_6994#0 GGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTA 152 consensus_6994#1 GGATTTTTTACAAACATTACACTCTGGTGTTGATTCAGATTAACCAGCGTGTTAGTGTTA 238 ***************************** ************** ******* * ***** consensus_6994#0 TTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCC 212 consensus_6994#1 TTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACCGCCACATTTAGGGATCC 298 ****************************************** * * ************ consensus_6994#0 TCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCA 272 consensus_6994#1 TCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCA 358 ************************************************************ consensus_6994#0 CACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATA 332 consensus_6994#1 CACGTTCAACATATATTCGACATAACTATATCATTACAAATACACCAGAGCGGGCCGG-- 416 ******************************************** * * consensus_6994#0 TGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCT 392 consensus_6994#1 ------------------------------------------------------------ consensus_6994#0 AACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATG 452 consensus_6994#1 ------------------------------------------------------------ consensus_6994#0 AGGTACAGTATAAC 466 consensus_6994#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||