These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence [CACTCGTCACGCGACANAAATTCAGATATAAAGTTGAACTATTTTGTTTTAAGAAATTCTGTATCAAATGAGATTATTCATTTAACACAGGCTACTATGGATTACTGTTCAGTTTTATCAGTATACACTGCAGATTCTCTGGAATCATCAGTGGAGGAACTTTCCTCCTCATCACCTTCTTGTCCTTCGTGTTCATTCCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTAATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACTGAAATAAAACCAAGCAATAAAAATATATTTTTAGAGTGTTAATAAACACTTGACAAATTACAATTTTTTAAATTGGAATATGACATTACGTATGGTTATGTCTTTCTCGAAACCATACTAAATTATACAGTTAAAGAAGTAGCTACCACCGTGTGTAAAAGACGAACGTTAATCTCACCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTCGTTCCTAATCATGTTATTCTTCTTAATCTTATGCAGTTTGTATCTGATGATAGACCTTGAAATAGAATGACCAATTCGATTCATCCTTCANATCTTGTTTCACTTTACCTTCATCTCACTTCAACTTATCAAAGGGATCAGTATGCTTCAATAGTATTTAATAAACTTTAACANAATGGATATGACAAGGGATAGTAGAACCTACCACAAGCAAAAATCAGATNTGACTATCATNNATTATTCCGAAANAGATAGNTNTTNATAATATCACCATTTGGTTTATCAAGGAAAGAATAGTTGTATTTTT] [+] EMBL CD082327 [CACTCGTCACGCGACANAAATTCAGATATAAAGTTGAACTATTTTGTTTTAAGAAATTCTGTATCAAATGAGATTATTCATTTAACACAGGCTACTATGGATTACTGTTCAGTTTTATCAGTATACACTGCAGATTCTCTGGAATCATCAGTGGAGGAACTTTCCTCCTCATCACCTTCTTGTCCTTCGTGTTCATTCCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTAATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACTGAAATAAAACCAAGCAATAAAAATATATTTTTAGAGTGTTAATAAACACTTGACAAATTACAATTTTTTAAATTGGAATATGACATTACGTATGGTTATGTCTTTCTCGAAACCATACTAAATTATACAGTTAAAGAAGTAGCTACCACCGTGTGTAAAAGACGAACGTTAATCTCACCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTCGTTCCTAATCATGTTATTCTTCTTAATCTTATGCAGTTTGTATCTGATGATAGACCTTGAAATAGAATGACCAATTCGATTCATCCTTCANATCTTGTTTCACTTTACCTTCATCTCACTTCAACTTATCAAAGGGATCAGTATGCTTCAATAGTATTTAATAAACTTTAACANAATGGATATGACAAGGGATAGTAGAACCTACCACAAGCAAAAATCAGATNTGACTATCATNNATTATTCCGAAANAGATAGNTNTTNATAATATCACCATTTGGTTTATCAAGGAAAGAATAGTTGTATTTTT] consensusID : consensus_7000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [AATTTTTTAAATTGGAATATGCCATTACGTATGGTTATGTCTTTCTCGAACCCATATTAAATTATCCAGTTAAAGAAGTAGCTCCCCCCGTGTGTAAAAGACGAACGTTATTCTCCCCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTGGTTCCTAATCAGGTTATTTTTTTTAATCTTATCCAGTTGGTATCTGATGATAGCCCTTGAAATAGAATGCCCAATTCGATTCATCCTTCAAATCTTGTTTCACTTTCCCTTCATCTCACTTCAATTTAATCAAAGGATCAAGTATGCTTCAATAGTATTTAATAAACTTTACCAAAAATGGATATGCCAAGGATAAGTAGACCCTCCCCCAAAGCAAAAATCAAGAGTATGACTATCATAATTTATTCCGGAAAAGATAAGTTTTTTATATAATCCCCATTTGTTTTATCAAGAAAAGATAGTTG] [-] EMBL CD075926 [AATTTTTTAAATTGGAATATGCCATTACGTATGGTTATGTCTTTCTCGAACCCATATTAAATTATCCAGTTAAAGAAGTAGCTCCCCCCGTGTGTAAAAGACGAACGTTATTCTCCCCGAAAAAAATATAATAGAATGAAATATGTATAAATAAAAATAAGTCAAATTTTGGTTCCTAATCAGGTTATTTTTTTTAATCTTATCCAGTTGGTATCTGATGATAGCCCTTGAAATAGAATGCCCAATTCGATTCATCCTTCAAATCTTGTTTCACTTTCCCTTCATCTCACTTCAATTTAATCAAAGGATCAAGTATGCTTCAATAGTATTTAATAAACTTTACCAAAAATGGATATGCCAAGGATAAGTAGACCCTCCCCCAAAGCAAAAATCAAGAGTATGACTATCATAATTTATTCCGGAAAAGATAAGTTTTTTATATAATCCCCATTTGTTTTATCAAGAAAAGATAGTTG] consensusID : consensus_7000#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 465 fasta sequence [GTCAGTGGAGGAATTTCCTCCTCATCACCTTCTTGNTCCTTCGTGTTCATTCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTCATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACAGCACATATAAGATTGTTTAATTCTGGATTGCCATTTTTATACACAGCACCCAATGCCCCAGCAGTATCTCGAAAATCCCGTACAGGTGGTCCCAGTTCTTTCTCCAATTTACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATACAGATGTTCTTACCCAACCGGTTATTTCACGGATACCATGAAACTTACTTAAAAGAAATGCTTGACAATCACCAACGCTTGCTATTACAACAGAAAATTGAGCTTTGCCATATGCTGAAGTTTGTTCATTTGT] [+] EMBL CD061738 [GTCAGTGGAGGAATTTCCTCCTCATCACCTTCTTGNTCCTTCGTGTTCATTCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGCTAGTTGTGTCATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCTGGATCACAAAGTGTTACAGCACATATAAGATTGTTTAATTCTGGATTGCCATTTTTATACACAGCACCCAATGCCCCAGCAGTATCTCGAAAATCCCGTACAGGTGGTCCCAGTTCTTTCTCCAATTTACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATACAGATGTTCTTACCCAACCGGTTATTTCACGGATACCATGAAACTTACTTAAAAGAAATGCTTGACAATCACCAACGCTTGCTATTACAACAGAAAATTGAGCTTTGCCATATGCTGAAGTTTGTTCATTTGT] [-] EMBL CD193336 [ TCACATGGATCACAAAGAGTTCCAGCACATATAAGATTGTTTAATTTTCGATTGCCATTTTTATACGCAGCACCCAATGCCCCACCAGTATCTCTAAAATCCCGTACAGGTGGTCCCAGTTCTTTCTCCAATTCACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATACAGATGTTCTTACCCAACCGGTTATGTCg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7000#0 CACTCGTCACGCGACANAAATTCAGATATAAAGTTGAACTATTTTGTTTTAAGAAATTCT 60 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 GTATCAAATGAGATTATTCATTTAACACAGGCTACTATGGATTACTGTTCAGTTTTATCA 120 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 GTATACACTGCAGATTCTCTGGAATCATCAGTGGAGGAACTTTCCTCCTCATCACCTTCT 180 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 TGTCCTTCGTGTTCATTCCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAACAGC 240 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 TAGTTGTGTAATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTAT 300 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 ATCACCTGGATCACAAAGTGTTACTGAAATAAAACCAAGCAATAAAAATATATTTTTAGA 360 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 GTGTTAATAAACACTTGACAAATTACAATTTTTTAAATTGGAATATGACATTACGT-ATG 419 consensus_7000#1 --------------------------AATTTTTTAAATTGGAATATGCCATTACGT-ATG 33 consensus_7000#2 ---------------GTCAGTGGAGGAATTTCCTCCTCATCACCTTCTTGNTCCTTCGTG 45 ***** * * * * * * ** consensus_7000#0 GTTATGTCTTTCTCGAAACCATACTAAATTATACAGTTAAAGAAGTAGCTACCACCGTGT 479 consensus_7000#1 GTTATGTCTTTCTCGAACCCATATTAAATTATCCAGTTAAAGAAGTAGCTCCCCCCGTGT 93 consensus_7000#2 TTCATTCTCTTCATCAACAAAATCTAAATGCGGTGATTCAGGAA-CAGCTAGT----TGT 100 * ** *** ** * ***** ** * *** **** *** consensus_7000#0 GTAAAAGACGAACGTTAATCTCACCGAAAAAAATATAATAGAATGAAATATGTATAAATA 539 consensus_7000#1 GTAAAAGACGAACGTTATTCTCCCCGAAAAAAATATAATAGAATGAAATATGTATAAATA 153 consensus_7000#2 GTCATAACTGGATCGAAATTATCAATTAGTCCATCTGATCCAATTAGAACTATATCACCT 160 ** * * * * * * * ** * ** *** * * * *** * consensus_7000#0 AAAATAAGTCAAATTTTCGTTCCTAATCATGTTATTCTTCTTAATCTTATGCAGTTTGTA 599 consensus_7000#1 AAAATAAGTCAAATTTTGGTTCCTAATCAGGTTATTTTTTTTAATCTTATCCAGTTGGTA 213 consensus_7000#2 GGATCACAAAGTGTTACAGCACATA-TAAGATTGTTTAATTCTGGATTGCCATTTTTATA 219 * * ** * * ** * * ** ** * ** ** ** consensus_7000#0 TCTGATGATAGACCTTGAAATAGAATGACCAATTCGATTCATCCTTCANATCTTGTTTCA 659 consensus_7000#1 TCTGATGATAGCCCTTGAAATAGAATGCCCAATTCGATTCATCCTTCAAATCTTGTTTCA 273 consensus_7000#2 CACAGCACCCAATGCCCCAGCAGTATCTCGAAAAT--CCCGTACAGGTGGTCCCAGTTCT 277 * ** ** * ** * * * ** *** consensus_7000#0 CTTTACCTTCATCTCACTTCAACTTATCAAAGGGATCA-GTATGCTTCAATAGTATTTAA 718 consensus_7000#1 CTTTCCCTTCATCTCACTTCAATTTAATCAAAGGATCAAGTATGCTTCAATAGTATTTAA 333 consensus_7000#2 TTCTCCAATTTACTTTGTTCATTTGATTGTGTTGATAAATTATCAGATGACAATAC--AG 335 * * * * ** **** * * *** * *** * * ** * consensus_7000#0 TAAACTTTAACANAA-TGGATATGACAAGGGATA-GTAGAACCTACCACAA-GCAAAAAT 775 consensus_7000#1 TAAACTTTACCAAAAATGGATATGCCAAGGATAA-GTAGACCCTCCCCCAAAGCAAAAAT 392 consensus_7000#2 ATGTTCTTACCCAAC-CGGTTATTTCACGGATACCATGAAACTTACTTAAAAGAAATGCT 394 *** * * ** *** ** ** * * * * * ** * ** * consensus_7000#0 CAGA--TNTGACTATCATNNATTATTCCGA-AANAGATA-GNTNTTNATAATATCACCAT 831 consensus_7000#1 CAAGAGTATGACTATCATAATTTATTCCGG-AAAAGATAAGTTTTTTATATAATCCCCAT 451 consensus_7000#2 TGACA--ATCACCAACGCTTGCTATTACAACAGAAAATTGAGCTTTGCCATATGCTGAAG 452 * ** * * **** * * * ** ** * * * consensus_7000#0 TTGGTTTATCAAGGAAAGAATAGTTGTATTTTT 864 consensus_7000#1 TTGTTTTATCAAGAAAAGA-TAGTTG------- 476 consensus_7000#2 TTTGTTCATTTGT-------------------- 465 ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||