These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 772 fasta sequence [TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATTGGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATTCAGATGTTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTCTGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGTGTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGGCTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTTGTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA] [-] EMBL CD125629 [TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATTGGCTCTTGATTGCCC ] [+] EMBL CD095752 [ ACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTCTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGATGCATTTGAATTGGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATTCAGATGTTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTCTGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGTGTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGG ] [-] EMBL CD160167 [ TGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATACACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGGCTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTTGTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA] consensusID : consensus_7003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CTAATGAGGATGGGTCAGAGACATAATCCACAGTGGAATTCTCAGGCGATTCGGAAATACACCGAATGGTATCATATAAAAACCGAGCAACACTGTAAGCTCGAATTTTAATCGCCAACATAAATGGTGTTAGGTCTTCAGTATTGCGAGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACTCTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCGTACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGTGGTGCGCACATCCGAGTCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCGCCGCAACAGTAGCAGCTTCAATAGAAGATCGAATAAACCGAGCGGCCGCTAATGTCATTTCTACTGAGTTAGGATAATCACAC] [+] EMBL CD184750 [CTAATGAGGATGGGTCAGAGACATAATCCACAGTGGAATTCTCAGGCGATTCGGAAATACACCGAATGGTATCATATAAAAACCGAGCAACACTGTAAGCTCGAATTTTAATCGCCAACATAAATGGTGTTAGGTCTTCAGTATTGCGAGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACTCTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCGTACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGTGGTGCGCACATCCGAGTCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCGCCGCAACAGTAGCAGCTTCAATAGAAGATCGAATAAACCGAGCGGCCGCTAATGTCATTTCTACTGAGTTAGGATAATCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7003#0 TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCC 60 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 ATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGT 120 consensus_7003#1 -----------------------------------CTAATGAGGATGG--GTCAGAGACA 23 **** * * * * consensus_7003#0 TACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGG 180 consensus_7003#1 TAATCCACAGTGGAATTCTCAGGCGATTCGGAAAT---ACACCGAATGGTATCATATAAA 80 ** * * ** * * * * * * ** ** * * ** * * ** * consensus_7003#0 ACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATT 240 consensus_7003#1 AACCGAGCAAC---ACTGTAAGCTCGAATTTTAATCGCCAACATA------AATGGTGTT 131 * * ** * * ** * * ** *** * ** * * * ** consensus_7003#0 GGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATT-CAGATG 299 consensus_7003#1 AGGTCTTCAGTATTGCG-AGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACT 190 * **** * * * *** ** *** * * * * *** ** ** * ** consensus_7003#0 TTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTC 359 consensus_7003#1 CTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCG 250 *** * ** * * * *** *** * *** ** **** consensus_7003#0 TGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGT 419 consensus_7003#1 TACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGT 310 * *** ** * **** * ** * * ** * ** consensus_7003#0 GTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTC 479 consensus_7003#1 GGTGCGC----ACATCCGAG---TCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCG 363 * * * * * * ** * ** * ** * * * ** * * consensus_7003#0 CTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATAC 539 consensus_7003#1 CCGCAA-CAGTAGCAGCTTCAATAGAAGAT---CGAATAA-ACCGAGCGGCCGCTAATGT 418 * *** ** * ** **** ** * ** * ** ** * ** ** consensus_7003#0 CAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAG 599 consensus_7003#1 CA---------TTTCTACTGAGTTAGGATAATCACAC----------------------- 446 ** * * *** ** * ** * * consensus_7003#0 CGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGG 659 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 CTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTT 719 consensus_7003#1 ------------------------------------------------------------ consensus_7003#0 GTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA 772 consensus_7003#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||