These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCTTAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGCCACACAAAATCTTATCAATGAGTTACAGACAGTTGAACACTTAACAGATGACAGACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAATACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGATGATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAAGAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCAACTCCAGAAACGTTAAACAACCAGCTGGAAATCCAACCTTTAAATGATATGA] [+] EMBL CD080675 [GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCTTAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGCCACACAAAATCTTATCAATGAGTTACAGACAGTTGAACACTTAACAGATGACAGACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAATACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGATGATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAAGAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCAACTCCAGAAACGTTAAACAACCAGCTGGAAATCCAACCTTTAAATGATATGA] [+] EMBL CD062332 [ ATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGC ] consensusID : consensus_7088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence [TGACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAGCAAACTACACAAGAAGAAGTAATGAATCTAACTGAACGAAGTGAACAGCTTCCCACCGATGAAAACGATATACCATTTGACTTTGTTGTACATGATATAAACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTTCCCGCAGTAGAAGAACAGATAACTACAGAATATGAATCCCATCGTAAAGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGA] [-] EMBL CD071444 [TGACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAGCAAACTACACAAGAAGAAGTAATGAATCTAACTGAACGAAGTGAACAGCTTCCCACCGATGAAAACGATATACCATTTGACTTTGTTGTACATGATATAAACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTT ] [+] EMBL CD192407 [ AACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTTCCCGCAGTAGAAGAACAGATAACTACAGAATATGAATCCCATCGTAAAGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7088#0 GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCC 60 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 TGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCT 120 consensus_7088#1 ----------------------------------------------------------TG 2 consensus_7088#0 TAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGT 180 consensus_7088#1 ACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAG--CAAACTACACA 60 ** * *** * * * * ** * ** * **** * ** *** ** consensus_7088#0 TGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAAC 240 consensus_7088#1 AGAAGAAGTAATGAATCTAA------CTGAACGAAGTGAACAGCTTCCCACCGATGAAAA 114 *** *** * * ** * * * **** * * * *** consensus_7088#0 TAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAAC 300 consensus_7088#1 CGATATACCAT---TTGACTTTGTTGTACATGATATAAACGAGG----AAGTAGGTGGAA 167 * **** * * * **** * ** *** * ** * * * consensus_7088#0 GTCATTATCTGATAAAGACATATG-TGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGT 359 consensus_7088#1 ATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAA--CACCTCTTGAGAA 225 ** ** ** * *** ** ** ** * * *** * ** consensus_7088#0 ACGCCACACAAAATCTTATCA--ATGAGTTACAGACAGTTGAACACTTAACAGATGACAG 417 consensus_7088#1 AGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAG 285 * * * ******* * * * ** * ******* ** * * *** ** consensus_7088#0 ACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAAT 477 consensus_7088#1 TGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAA---TGTACC 342 *** *** * * ****** * * ** *** ** ** ** * consensus_7088#0 ACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGA--T 535 consensus_7088#1 ATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATT 402 * * ** ** * ** * * * * **** ** ** *** ** * consensus_7088#0 GATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAA 595 consensus_7088#1 TCCCGCAGTAGAAGAACAGATAACTACAGAATATGA---ATCCCATCGTAAAGAAAAAGA 459 * * ** * *** ** * * ** * *** ** * ** * consensus_7088#0 GAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCA-ACTCCAGAAACGTTAAA 654 consensus_7088#1 CAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAA 519 **** **** * * ** * ***** ** ***** *** consensus_7088#0 CAACCAGCTGGAAATCCAACCTTTAAATGATATGA 689 consensus_7088#1 TTATAGTACTGA----------------------- 531 * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||