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Schistosoma mansoni
cluster # 7088 cluster # 7088       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7088#0 length = 689 sequences # 2  
consensus_7088#1 length = 531 sequences # 2  

consensusID : consensus_7088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence
                              [GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCTTAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGCCACACAAAATCTTATCAATGAGTTACAGACAGTTGAACACTTAACAGATGACAGACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAATACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGATGATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAAGAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCAACTCCAGAAACGTTAAACAACCAGCTGGAAATCCAACCTTTAAATGATATGA]

[+] EMBL CD080675             [GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCTTAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGCCACACAAAATCTTATCAATGAGTTACAGACAGTTGAACACTTAACAGATGACAGACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAATACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGATGATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAAGAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCAACTCCAGAAACGTTAAACAACCAGCTGGAAATCCAACCTTTAAATGATATGA]
[+] EMBL CD062332             [                                                                                                                                   ATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGC                                                                                                                                                                                                                                                                                                                                      ]


>consensus_7088#0 GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCC TGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCT TAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGT TGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAAC TAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAAC GTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTA CGCCACACAAAATCTTATCAATGAGTTACAGACAGTTGAACACTTAACAGATGACAGACC AGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAATACA TAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGATGATAA TAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAAGAACA TCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCAACTCCAGAAACGTTAAACAACCA GCTGGAAATCCAACCTTTAAATGATATGA



consensusID : consensus_7088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 531
fasta sequence
                              [TGACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAGCAAACTACACAAGAAGAAGTAATGAATCTAACTGAACGAAGTGAACAGCTTCCCACCGATGAAAACGATATACCATTTGACTTTGTTGTACATGATATAAACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTTCCCGCAGTAGAAGAACAGATAACTACAGAATATGAATCCCATCGTAAAGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGA]

[-] EMBL CD071444             [TGACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAGCAAACTACACAAGAAGAAGTAATGAATCTAACTGAACGAAGTGAACAGCTTCCCACCGATGAAAACGATATACCATTTGACTTTGTTGTACATGATATAAACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTT                                                                                                                                ]
[+] EMBL CD192407             [                                                                                                                                                    AACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTTCCCGCAGTAGAAGAACAGATAACTACAGAATATGAATCCCATCGTAAAGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGA]


>consensus_7088#1 TGACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAGCAAACTACACA AGAAGAAGTAATGAATCTAACTGAACGAAGTGAACAGCTTCCCACCGATGAAAACGATAT ACCATTTGACTTTGTTGTACATGATATAAACGAGGAAGTAGGTGGAAATCTCGATAGAAT TAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATT TGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACA CACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGG GGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTTCCCGCAGTAGAAGAACA GATAACTACAGAATATGAATCCCATCGTAAAGAAAAAGACAACAGTGATCTCATAAATAC ACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7088#0      GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCC 60
consensus_7088#1      ------------------------------------------------------------
                                                                                  

consensus_7088#0      TGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCT 120
consensus_7088#1      ----------------------------------------------------------TG 2
                                                                                  

consensus_7088#0      TAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGT 180
consensus_7088#1      ACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAG--CAAACTACACA 60
                         ** *  *** *  *   *  * ** * ** *   **** *  **  ***  **    

consensus_7088#0      TGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAAC 240
consensus_7088#1      AGAAGAAGTAATGAATCTAA------CTGAACGAAGTGAACAGCTTCCCACCGATGAAAA 114
                       *** *** *    *  **       * * *    ****     *    *   *  *** 

consensus_7088#0      TAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAAC 300
consensus_7088#1      CGATATACCAT---TTGACTTTGTTGTACATGATATAAACGAGG----AAGTAGGTGGAA 167
                        *    ****   *  *    *    ****  *  ** *** *    **  *   * * 

consensus_7088#0      GTCATTATCTGATAAAGACATATG-TGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGT 359
consensus_7088#1      ATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAA--CACCTCTTGAGAA 225
                       **   **   ** *  ***  ** **   **     * *  ***     *  **     

consensus_7088#0      ACGCCACACAAAATCTTATCA--ATGAGTTACAGACAGTTGAACACTTAACAGATGACAG 417
consensus_7088#1      AGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAG 285
                      *  * * ******* * *  *  **   *      ******* **   *  * ***  **

consensus_7088#0      ACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAAT 477
consensus_7088#1      TGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAA---TGTACC 342
                           *** ***  * *     ******    * *  ** *** **   **   ** *  

consensus_7088#0      ACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGA--T 535
consensus_7088#1      ATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATT 402
                      *  * **      ** * **  * *     *   *   **** ** ** ***   **  *

consensus_7088#0      GATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAA 595
consensus_7088#1      TCCCGCAGTAGAAGAACAGATAACTACAGAATATGA---ATCCCATCGTAAAGAAAAAGA 459
                            *   * ** *    *** ** * * **  *   *** ** *  **        *

consensus_7088#0      GAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCA-ACTCCAGAAACGTTAAA 654
consensus_7088#1      CAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAA 519
                       ****   ****   *   *            ** * ***** **  *****     ***

consensus_7088#0      CAACCAGCTGGAAATCCAACCTTTAAATGATATGA 689
consensus_7088#1      TTATAGTACTGA----------------------- 531
                        *       **                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)