These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 503 fasta sequence [TATCCATGGATGTTCTAAAGCTTGATGAACTGTCATTCGTTGTTTTGGATCAGAATGTAGTAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGGTTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGCATTAGTTAATTCTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTGCATGCATTTGTCCTAGATCAGCCAGTGCAATACGTTGCCTAGATTGATCAGTAAAGAGGATATTCTCTGGTTGTAAACCAAGATGTACACCACCACTTTTGTGTATTTGTGCAGTTAAATCTAATAACTGACGTAATATATCCGCTGCTTTATGCTCAGTTACTGTAATACGTCGACCTAGTTGGTGCCATAATCTATCACCGG] [-] EMBL CD134311 [TATCCATGGATGTTCTAAAGCTTGATGAACTGTCATTCGTTGTTTTGGATCAGAATGTAGTAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGGTTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGCATTAGTTAATTCTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTGCAT ] [-] EMBL CD134341 [ AACTGTCATTCGTTGTTTTGGATCAGAATGTAGTAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGGTTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGCATTAGTTAATTCTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGG TTATCAACAGTAAGTGCAT ] [+] EMBL CD180969 [ GGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGGATTAGTTAATTCTGGTGGAATATATACCATATAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTGCATGCATTTGTCCTAGATCAGCCAGTGCAATACGTTGCCTAGATTGATCAGTAAAGAGGATATTCTCTGGTTGTAAACCAAGATGTACACCACCACTTTTGTGTATTTGTGCAGTTAAATCTAATAACTGACGTAATATATCCGCTGCTTTATGCTCAGTTACTGTAATACGTCGACCTAGTTGGTGCCATAATCTATCACCGG] consensusID : consensus_7116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [TACAGTAACTGAGCATAAAGCAGCGGATATATTACGTCAGTTATTAGATTTAACTGCACAAATACACAAAAGTGATGGTGTACATCTTGGTTTACAAGTAAGTGTTGTTAATTTATGCAGTAAATTGGGCGAGACTATAATTTATGGATGGACCAATCAGATTTAAAATAGTAGGTCTTATGTTTTGGCACGAGATTCATCCACTCATTTGGCTAAATACTATTTCGGCATTATGACTGATATCAGTTCGTGATGAAAACATTAAATATAATCTCTAACCCTAACATTCAACTGT] [+] EMBL CD110849 [TACAGTAACTGAGCATAAAGCAGCGGATATATTACGTCAGTTATTAGATTTAACTGCACAAATACACAAAAGTGATGGTGTACATCTTGGTTTACAAGTAAGTGTTGTTAATTTATGCAGTAAATTGGGCGAGACTATAATTTATGGATGGACCAATCAGATTTAAAATAGTAGGTCTTATGTTTTGGCACGAGATTCATCCACTCATTTGGCTAAATACTATTTCGGCATTATGACTGATATCAGTTCGTGATGAAAACATTAAATATAATCTCTAACCCTAACATTCAACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7116#0 TATCCATGGATGTTCTAAAGCTTGATGAACTGTCATTCGTTGTTTTGGATCAGAATGTAG 60 consensus_7116#1 ------------------------------------------------------------ consensus_7116#0 TAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGG 120 consensus_7116#1 ------------------------------------------------------------ consensus_7116#0 TTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCA 180 consensus_7116#1 ------------------------------------------------------------ consensus_7116#0 CATATCAGCAGATTGACCAACTCGTGCCGATTTACTAAT-TGGCATAGCATTAGTTAATT 239 consensus_7116#1 --------TACAGTAACTGA---GCATAAAGCAGCGGATATATTACGTCAGTTATTAGAT 49 * * * ** * * * * ** * * ** * *** * consensus_7116#0 CTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTG 299 consensus_7116#1 TTAACTGCACAAATAC-ACAAAA-GTGATGGTGTACATCTTGGTTTACAAGTAAGTGTTG 107 * * * * **** * * ** *** * ** ****** * * ** ** consensus_7116#0 CATGCATTTGTCCTAGATCAGCCAGTGCAATACGTTGCCTAGATTGATCAGTAAAGAGGA 359 consensus_7116#1 TTAATTTATGCAGTAAATTGGGCGAGACTATAATTTA--TGGATGGACCAATCAGA---- 161 * ** ** ** * * * *** ** * *** ** ** * * consensus_7116#0 TATTCTCTGGTTGTAAACCAAGATGTACACCACCACTTTTGTGTATTTGTGCAGTTAAAT 419 consensus_7116#1 ---TTTAAAATAGTAGGTCTTATGTTTTGGCACGAGATTCATCCACTCATTTGGCTAAAT 218 * * * *** * * *** * ** * * * * * ***** consensus_7116#0 CTAATAACTGACGTAATATATCCGCTGCTTTATGCTCAGTTACTGTAATACGTCGACCTA 479 consensus_7116#1 ------ACTATTTCGGCATTATGACTGATATCAGTTC-GTGATGAAAACAT-TAAATATA 270 *** ** *** * * * ** ** * ** * * * ** consensus_7116#0 GTTGGTG-CCATAATCTATCACCGG 503 consensus_7116#1 ATCTCTAACCCTAACATTCAACTGT 295 * * ** *** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||