These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 436 fasta sequence [AATAACAAAATAACCCAAAAAACAACAAAATTCTAAAAAACAGAAAGGATGCCAATTGAACAAAGACCATATAGTAATGTTATACATCAAAGTGGTGAAAGAAAAGCTGTTATTAAATATGTTGAAATGAGTAAAGAAATGCAACAAGATG-CTGTACAAACTGCTGCAATGGCTATGGATAAATATAA-TGA-TGATAAAGAT-ATTGCATTATTTTTAAAAAAAGAATTTGATCGTAAATATGAACCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAAACAATTCTGTATTTATTTTTCATTGGAAGATCGTGGAGTTCTTCTATTCAAAACTGTATGAAATATCCAACTAAAAATTGTTTCTTCATCATTACTTCTATTAGTTACGATTATAATAATATAGATATCAAGTAAAT] [+] EMBL CD137035 [AATAACAAAATAACCCAAAAAACAACAAAATTCTAAAAAACAGAAAGGATGCCAATTGAACAAAGACCATATAGTAATGTTATACATCAAAGTGGTGAAAGAAAAGCTGTTATTAAATATGTTGAAATGAGTAAAGAAATGCAACAAGATG CTGTACAAACTGCTGCAATGGCTATGGATAAATATAA TGA TGATAAAGAT ATTGCATTATTTTTAAAAAAAGAATTTGATCGTAAATATGAACCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAAACAATTCTGTATTTATTTTTCATTGGAAGATCGTGGAGTTCTTCTA ] [+] EMBL SMAA14104 [ AAAAAACAGAAAAGATGCCAATTGAACAAAGACCATATAGTAATGTTATACATGAAAGTGGTGAAAGAAAAGCTGTTATTAAATATGTTGAAATGAGTAAAGAAATGCAACAAGATGCCTGTACAAA CTGCAATGGCTATGGATAAATATAATTGATTGATAAAGATCATTG ] [+] EMBL SM858 [ AAGATG CTGTACAAACTGCTGCAATGGCTATGGATAAATATAA TGA TGATAAAGAT NTTGCATTATTTNTAAAAAAAGAATNTGATCGTAAATATGAACCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAAACAANTCTGTATTTATTTCCCATTGGAAGATCGCGGAGTTCTTCTATTCAAAACTGTATGAAATATCCAACTAAAAATTGTTTCTTCATCATTACTTCTATTAGTTACGATTATAATAATATAGATATCAAGTAAAT] consensusID : consensus_7122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [TATGGATAAATATAATGATGATAAAGATATTGCATTATTTTTAAACAAAGAATTTGATCGTAAATATGAAGCCAACATGGCATTGTATTATTGGAAGTAATTTTCAAGTTATGTAACGCATATGAAACAATTCTGAACTCTTAGTTTTTCATTGGAAGATCGTGGAGTTCCTCCTATTCAAAACTGTAGTGAATTTCCACTAAAATTGTTTTTCATCATAACTTCAATTGGTTAGGATTTATAA] [+] EMBL AI974225 [TATGGATAAATATAATGATGATAAAGATATTGCATTATTTTTAAACAAAGAATTTGATCGTAAATATGAAGCCAACATGGCATTGTATTATTGGAAGTAATTTTCAAGTTATGTAACGCATATGAAACAATTCTGAACTCTTAGTTTTTCATTGGAAGATCGTGGAGTTCCTCCTATTCAAAACTGTAGTGAATTTCCACTAAAATTGTTTTTCATCATAACTTCAATTGGTTAGGATTTATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7122#0 AATAACAAAATAACCCAAAAAACAACAAAATTCTAAAAAACAGAAAGGATGCCAATTGAA 60 consensus_7122#1 ------------------------------------------------------------ consensus_7122#0 CAAAGACCATATAGTAATGTTATACATCAAAGTGGTGAAAGAAAAGCTGTTATTAAATAT 120 consensus_7122#1 ------------------------------------------------------------ consensus_7122#0 GTTGAAATGAGTAAAGAAATGCAACAAGATGCTGTACAAACTGCTGCAATGGCTATGGAT 180 consensus_7122#1 -----------------------------------------------------TATGGAT 7 ******* consensus_7122#0 AAATATAATGATGATAAAGATATTGCATTATTTTTAAAAAAAGAATTTGATCGTAAATAT 240 consensus_7122#1 AAATATAATGATGATAAAGATATTGCATTATTTTTAAACAAAGAATTTGATCGTAAATAT 67 ************************************** ********************* consensus_7122#0 GAA-CCAACATGGCATTGTATTATTGGAAGTAAATTTTCAAGTTATGTAACGCATATAAA 299 consensus_7122#1 GAAGCCAACATGGCATTGTATTATTGGAAGTAA-TTTTCAAGTTATGTAACGCATATGAA 126 *** ***************************** *********************** ** consensus_7122#0 ACAATTCTGTATTT---ATTTTTCATTGGAAGATCGTGGAGTTCTTC-TATTCAAAACTG 355 consensus_7122#1 ACAATTCTGAACTCTTAGTTTTTCATTGGAAGATCGTGGAGTTCCTCCTATTCAAAACTG 186 ********* * * ************************** ** ************ consensus_7122#0 TATGAAATATCCAACTAAAAATTGTTTCTTCATCATTACTTCTATTAGTTACGATT-ATA 414 consensus_7122#1 TAGTGAATTTCCACT--AAAATTGTTT-TTCATCATAACTTCAATTGGTTAGGATTTATA 243 ** *** **** ********** ******** ***** *** **** **** *** consensus_7122#0 ATAATATAGATATCAAGTAAAT 436 consensus_7122#1 A--------------------- 244 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||