These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [TCAGTTGATAATCCACACGACGTTGTTGCATCACTAGACGAGACAATTAATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTTCGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACAATCTGGTATTGGTCAAACAGACAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCACTAACTTAAAACCTAACCCCGATTTATCTCCCCAAATACCTCCATCCAATGCA] [+] EMBL CD155562 [TCAGTTGATAATCCACACGACGTTGTTGCATCACTAGACGAGACAATTAATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTTCGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACAATCTGGTATTGGTCAAACAGACAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCACTAACTTAAAACCTAACCCCGATTTATCTCCCCAAATACCTCCATCCAATGCA] consensusID : consensus_7126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 309 fasta sequence [AATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTACGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGGCAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTATGTAAAACAAATGAAAAATCTATACGAAGGAAGTGAAATAATTCAAGAAACAATTCCAACGTCT] [+] EMBL CD164605 [AATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTACGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGGCAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTATGTAAAACAAATGAAAAATCTATACGAAGGAAGTGAAATAATTCAAGAAACAATTCCAACGTCT] [+] EMBL CD164541 [AATTCATCTTGTCAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACATCTATCAACTTTCCTTCGCCAGGATTATCTAAACGTGATTCTATTTCATCAATGTCAGTTGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGACAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTATGTA ] consensusID : consensus_7126#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [ATGCAGGTAGATTTAAGGAAATATTCGAAACGACACTATCACTTCGAGACGTTGGAATTGTTTCTTGAATTATTTCACTTCCTTCGTATAGATTTTACATTTGTTTTACATAACCTTGTTTAATTGTTATACTTAAGCGATGACGTAATGATGATTTCGAATCTAATGGAACTT] [+] EMBL CD179864 [ATGCAGGTAGATTTAAGGAAATATTCGAAACGACACTATCACTTCGAGACGTTGGAATTGTTTCTTGAATTATTTCACTTCCTTCGTATAGATTTTACATTTGTTTTACATAACCTTGTTTAATTGTTATACTTAAGCGATGACGTAATGATGATTTCGAATCTAATGGAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7126#0 TCAGTTGATAATCCACACGACGTTGTTGCATCACTAGACGAGACAATTAATTCATCTTGT 60 consensus_7126#1 ------------------------------------------------AATTCATCTTGT 12 consensus_7126#2 ------------------------------------------------------------ consensus_7126#0 CAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACA 120 consensus_7126#1 CAAGATAGTTCTGGGTTGAATGAAACTTCTTCAATATCCGGCAGCGGAGGTGGTGACACA 72 consensus_7126#2 -------------------ATGCAG----GTAGATTTAAGGAAATATTCGAAACGACAC- 36 *** * * ** * ** * * ***** consensus_7126#0 TCTATCAACTTTCCTTCGCCAGGATTATCTAA-ACGTGATTCTATTTCATCAATGTCAGT 179 consensus_7126#1 TCTATCAACTTTCCTACGCCAGGATTATCTAA-ACGTGATTCTATTTCATCAATGTCAGT 131 consensus_7126#2 --TATCA-CTTCGAGACGTTGGAATTGTTTCTTGAATTATTTCACTTCCTTCGTATAGAT 93 ***** *** ** * *** * * * *** * *** * * * * consensus_7126#0 TGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACAATCTGGTATTGGTCAAACAGA 239 consensus_7126#1 TGGATCCACATGTCAAACTCCTGTTGATTCTTATTTACGATCTGGTATTGGTCAAACAGG 191 consensus_7126#2 TTTACATTTGTTTTACATAACC-TTGTTTAATTGTTATACTTAAGCGATGACGTAAT-GA 151 * * * * * * * *** ** * *** * * ** ** * consensus_7126#0 CAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCACTAACTTAA 299 consensus_7126#1 CAAAATTAAATCTAATGGAGAGGAGTTTGGGATTATGGGAAATGATTCGCGTTA-TGTAA 250 consensus_7126#2 TGATTTCGAATCTAATGGAACTT------------------------------------- 174 * * *********** consensus_7126#0 AACCTAACCCCGATTTAT-CTCCCCAAATACCTCCATCCAATGCA-------------- 343 consensus_7126#1 AACAAATGAAAAATCTATACGAAGGAAGTGAAATAATTCAAGAAACAATTCCAACGTCT 309 consensus_7126#2 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||