cluster # 7185

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Schistosoma mansoni
cluster # 7185 cluster # 7185 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7185#0 length = 589 sequences # 2

consensus_7185#1 length = 417 sequences # 3

consensusID : consensus_7185#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence

                              [CACCACGTTCAAGCATATCTTCATATCAAAATATCCCCATCACTTCAGGATCGGATAGCGTATCAAATCATGATTTGATTAATGCATTACCTCTTCCACCATTGTTACCGCCCCCTCCTCCACCGCCATCGTCATCAGTGTCATCATCTACCACTGAGTCGTTTACTTCTATCGGTGCTGGTGGTTCCATGCGCACTCGGAATGTCGGTTTGTCATCGTTTAATACACTCAGTAAGGGTCATTCAATATCAGCGATACGTCCACGTGGATACAGTTGCAATACATGGACTAAAAAAGGAAATTCAAGTCAACTCAATTCTGCAAAGTCATTGGAATCAAAAGATGAAACTAAAAATGCAACTTTCAGTTTGTCTTCTTTTGAGACCCTATTCACAGTACAAGAAACTAATACAAAAGATATTCAGTCAAATAATAGTAAAGATTCCGTTCAGAAAGACTGCTCTTCAGATTTTAAATTTGGTTTTAAAGATTCTGATAGTTGTAATAGTTTAATAGATACCTTACAAAGAATTTCATCATCTGCAATGGGTGTTAATTTATCACCTGTAAAGAATGATGGTGATGGTGG]

[+] EMBL CD181755             [CACCACGTTCAAGCATATCTTCATATCAAAATATCCCCATCACTTCAGGATCGGATAGCGTATCAAATCATGATTTGATTAATGCATTACCTCTTCCACCATTGTTACCGCCCCCTCCTCCACCGCCATCGTCATCAGTGTCATCATCTACCACTGAGTCGTTTACTTCTATCGGTGCTGGTGGTTCCATGCGCACTCGGAATGTCGGTTTGTCATCGTTTAATACACTCAGTAAGGGTCATTCAATATCAGCGATACGTCCACGTGGATACAGTTGCAATACATGGACTAAAAAAGGAAAT                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD131746             [                                                                                                                                                                                                                                                                  GTCCACGTGGATACAGTTGCAATACATGGACTAAAAAAGGAAATTCAAGTCAACTCAATTCTGCAAAGTCATTGGAATCAAAAGATGAAACTAAAAATGCAACTTTCAGTTTGTCTTCTTTTGAGACCCTATTCACAGTACAAGAAACTAATACAAAAGATATTCAGTCAAATAATAGTAAAGATTCCGTTCAGAAAGACTGCTCTTCAGATTTTAAATTTGGTTTTAAAGATTCTGATAGTTGTAATAGTTTAATAGATACCTTACAAAGAATTTCATCATCTGCAATGGGTGTTAATTTATCACCTGTAAAGAATGATGGTGATGGTGG]




>consensus_7185#0
CACCACGTTCAAGCATATCTTCATATCAAAATATCCCCATCACTTCAGGATCGGATAGCG
TATCAAATCATGATTTGATTAATGCATTACCTCTTCCACCATTGTTACCGCCCCCTCCTC
CACCGCCATCGTCATCAGTGTCATCATCTACCACTGAGTCGTTTACTTCTATCGGTGCTG
GTGGTTCCATGCGCACTCGGAATGTCGGTTTGTCATCGTTTAATACACTCAGTAAGGGTC
ATTCAATATCAGCGATACGTCCACGTGGATACAGTTGCAATACATGGACTAAAAAAGGAA
ATTCAAGTCAACTCAATTCTGCAAAGTCATTGGAATCAAAAGATGAAACTAAAAATGCAA
CTTTCAGTTTGTCTTCTTTTGAGACCCTATTCACAGTACAAGAAACTAATACAAAAGATA
TTCAGTCAAATAATAGTAAAGATTCCGTTCAGAAAGACTGCTCTTCAGATTTTAAATTTG
GTTTTAAAGATTCTGATAGTTGTAATAGTTTAATAGATACCTTACAAAGAATTTCATCAT
CTGCAATGGGTGTTAATTTATCACCTGTAAAGAATGATGGTGATGGTGG

consensusID : consensus_7185#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 417
fasta sequence

                              [TAGAGGCTGCGGTTGAAAAAGAGCTGCCACCACCGTTAAAAAACCGGGCATGCCAAATCTCTGTAAATGCAGCAGCTAAGCAAATTGAATTATTTGGCGAATTAATTGAATAGGTAGAAGGAGAAGGTGTAATACATGGTTCAATAATGGAACTATTATTCGGATGATTATGAAGGCGTGTTGGAGGTTCAGGAATAGGTCGAGCTTCTTTACCAACTACAGTACCATGTATATTAGCGTTAAAAGATGGCCAGGGTACGGAAGGACTGAAGGATTTGCTTGTCTCAGTTGAATCTGTTTCAAAAGCCATCCAATTAGATTGATCAATTGATTCATTATCCATTGAAGTAGGTGCTGTACTAGAACATCGTCGAACTAAGCCACCATCACCATCATTCTTTACAGGTGATAAATTAA]

[+] EMBL CD155804             [TAGAGGCTGCGGTTGAAAAAGAGCTGCCACCACCGTTAAAAAACCGGGCATGCCAAATCTCTGTAAATGCAGCAGCTAAGCAAATTGAATTATTTGGCGAATTAATTGAATAGGTAGAAGGAGAAGGTGTAATACATGGTTCAATAATGGAACTATTATTCGGATGATTATGAAGGCGTGTTGGAGGTTCAGGAATAGGTCGAGCTTCTTTACCAACTACAGTACCATGTA                                                                                                                                                                                          ]
[+] EMBL CD155834             [TAGAGGCTGCGGTTGAAAAAGAGCTGCCACCACCGTTAAAAAACCGGGCATGCCAAATCTCTGTAAATGCAGCAGCTAAGCAAATTGAATTATTTGGCGAATTAATTGAATAGGTAGAAGGAGAAGGTGTAATACATGGTTCAATAATGGAACTATTATTCGGATGATTATGAAGGCGTGTTGGAGGTTCAGGAATAGGTCGAGCTTCTTTACCAACTACAGTACCATGTA                                                                                                                                                                                          ]
[-] EMBL CD096293             [                                                                                                                     cAGGAGGAGGTGTAATACATGGTTCAATAATGGAACTATTATTCGGATGATTATGAAGGCGTGTTGGAGGTTCAGGAATAGGTCGAGCTTCTTTACCAACTACAGTACCATGTATATTAGCGTTAAAAGATGGCCAGGGTACGGAAGGACTGAAGGATTTGCTTGTCTCAGTTGAATCTGTTTCAAAAGCCATCCAATTAGATTGATCAATTGATTCATTATCCATTGAAGTAGGTGCTGTACTAGAACATCGTCGAACTAAGCCACCATCACCATCATTCTTTACAGGTGATAAATTAA]




>consensus_7185#1
TAGAGGCTGCGGTTGAAAAAGAGCTGCCACCACCGTTAAAAAACCGGGCATGCCAAATCT
CTGTAAATGCAGCAGCTAAGCAAATTGAATTATTTGGCGAATTAATTGAATAGGTAGAAG
GAGAAGGTGTAATACATGGTTCAATAATGGAACTATTATTCGGATGATTATGAAGGCGTG
TTGGAGGTTCAGGAATAGGTCGAGCTTCTTTACCAACTACAGTACCATGTATATTAGCGT
TAAAAGATGGCCAGGGTACGGAAGGACTGAAGGATTTGCTTGTCTCAGTTGAATCTGTTT
CAAAAGCCATCCAATTAGATTGATCAATTGATTCATTATCCATTGAAGTAGGTGCTGTAC
TAGAACATCGTCGAACTAAGCCACCATCACCATCATTCTTTACAGGTGATAAATTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7185#0      CACCACGTTCAAGCATATCTTCATATCAAAATATCCCCATCACTTCAGGATCGGATAGCG 60
consensus_7185#1      ------------------------------------------------------------
                                                                                  

consensus_7185#0      TATCAAATCATGATTTGATTAATGCATTACCTCTTCCACCATTGTTACCGCCCCCTCCTC 120
consensus_7185#1      ------------------------------------------------------------
                                                                                  

consensus_7185#0      CACCGCCATCGTCATCAGTGTCATCATCTACCACTGAGTCGTTTACTTCTATCGGTGCTG 180
consensus_7185#1      ---------------------TAGAGGCTGCGGTTGAAA-AAGAGCTGCCACCACCGTTA 38
                                            *    ** *   ***        ** * * *   * * 

consensus_7185#0      GTGGTTCCATGCGCACTCGGAATGTCGGTTTGTCATCGTTTAATACACTCAGTAAGGGTC 240
consensus_7185#1      AAAAACC---GGGCATGCCAAATCTC----TGTAAATGCAGCAGCTAAGCAAATTGAATT 91
                            *   * ***  *  *** **    *** *  *    *   *  **    *  * 

consensus_7185#0      ATTCAAT--ATCAGCGATACGTCCACGTGGATACAGTTGCAATACATGGACTAAAAAAGG 298
consensus_7185#1      ATTTGGCGAATTAATTGAATAGGTAGAAGGAGA-AGGTGTAATACATGGTTCAATAATGG 150
                      ***      ** *     *     *   *** * ** ** *********   ** ** **

consensus_7185#0      AAATTCAAGTCAACTCAATTCTGCAAAGTCATTGGAATCAAAAGATGAAACTAAAAATGC 358
consensus_7185#1      AACTATTATTCGGAT-GATTATGAAGGCGTGTTGGAGGTTCAGGAATAGGTCGAGCTTCT 209
                      ** *   * **   *  *** ** *      *****     * **  *     *   *  

consensus_7185#0      AACTTTCAGTTTGTCTTCTTTTGAGACCCTATTCACAGTACAAGAAACTAATACAAAAGA 418
consensus_7185#1      --TTACCAACTACAGTACCATGTATATTAGCGTTAAAAGATGGCCAGGGTACGGAAGGAC 267
                         *  **  *    * *  *  * *      * * *  *     *    *   **    

consensus_7185#0      TATTCAGTCAAATAATAGTAAA-GATTCCGTTCAGAAAGACTGCTCTTCAGATTTTAAAT 477
consensus_7185#1      TGAAGGATTTGCTTGTCTCAGTTGAATCTGTTTCAAAAGCCATCCAATTAGATTGATCAA 327
                      *      *    *  *   *   ** ** ***   **** *  *   * *****    * 

consensus_7185#0      TTGGTT--TTAAAGATTCTGATAGTTGTAATAGTTTAATAG----ATACCTTACAAAGAA 531
consensus_7185#1      TTGATTCATTATCCATTGAAGTAGGTGCTGTACTAGAACATCGTCGAACTAAGCCACCAT 387
                      *** **  ***   ***    *** **   ** *  ** *       **    * *  * 

consensus_7185#0      TTTCATCATCTGCAATGGGTGTTAATTTATCACCTGTAAAGAATGATGGTGATGGTGG 589
consensus_7185#1      CACCATCATTCTTTACAGGTGATAAATTAA---------------------------- 417
                         ******     *  **** *** ***