These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [TTTTTTTTTTTTTTCCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCNGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAAGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTANTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTTTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCTNTTAGGAGTTGATCGTTTAAATGTGAACGTGAATAAGTAATTAACAAATCGTNNTTTAACGAATGAACAGGACGAGAANTTATAGCCACTCGTAAATCAGATGATAATGCATATGAACCCCAACCCCAGTATGTTTNATTAAGAAACGGTGATGAATAATACCAGCTATTGGGTGATCATGAAGTACAATAC] [+] EMBL AI394752 [TTTTTTTTTTTTTTCCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCNGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAAGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTANTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTTTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCTNTTAGGAGTTGATCGTTTAAATGTGAACGTGAATAAGTAATTAACAAATCGTNNTTTAACGAATGAACAGGACGAGAANTTATAGCCACTCGTAAATCAGATGATAATGCATATGAACCCCAACCCCAGTATGTTTNATTAAGAAACGGTGATGAATAATACCAGCTATTGGGTGATCATGAAGTACAATAC] consensusID : consensus_7192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 553 fasta sequence [TAGAGAATGAATTTGTCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAA-ATTTGGTCAAATCCTTTANGAGTGATTCGTTTAAATGTGAACGT] [+] EMBL CD178498 [TAGAGAATGAATTTGTCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAA ATTTGGTCAAATCCTTTANGAGTGATTCGTTTAAATGTGAACGT] [+] EMBL CD194944 [ AAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAAAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTAATTACACTGATTACTCTGcat ] [+] EMBL CD194908 [ AAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAAAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGAT ] [+] EMBL CD195266 [ AAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTCGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTGGTATAAAATGAAACCGTTTCNGATATACAANATTT GTCAAATCTTTTANGAGTGATTCGTTTAAATGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7192#0 -TTTTTTTTTTTTTTCCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAG 59 consensus_7192#1 TAGAGAATGAATTTGTCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAG 60 * *** ******************************************** consensus_7192#0 AGTGTGAAATACAAGAGTCTATCNGGGAAAAGGGATGAATTACATTGATATAATGTTGAT 119 consensus_7192#1 AGTGTGAAATACAAGAGTCTATCGGG-AAAAGGGATGAATTACATTGATATAATGTTGAT 119 *********************** ** ********************************* consensus_7192#0 AATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATG 179 consensus_7192#1 AATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATG 179 ************************************************************ consensus_7192#0 TTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCC 239 consensus_7192#1 TTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCC 239 ************************************************************ consensus_7192#0 ACCTATCATACAACACACGGTCTGCAGTGGCGAAGAAGCCAATTTCGCTTGGTATACCTG 299 consensus_7192#1 ACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTG 299 ************************************ *********************** consensus_7192#0 GAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAA 359 consensus_7192#1 GAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAA 359 ************************************************************ consensus_7192#0 CAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTANTTGATGGGTGAA 419 consensus_7192#1 CAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAA 419 *********************************************** ************ consensus_7192#0 TATACATATCTGCATCTCCTTTGATAAGACTGATGGCTTTGAAGCCCGCACCACCTGCTG 479 consensus_7192#1 TATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTG 479 ************************************** ********************* consensus_7192#0 GTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCTNTTAGGAGTTGATCGT 539 consensus_7192#1 GTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCCTTTANGAGTGATTCGT 539 ******************************************* *** **** **** consensus_7192#0 TTAAATGTGAACGTGAATAAGTAATTAACAAATCGTNNTTTAACGAATGAACAGGACGAG 599 consensus_7192#1 TTAAATGTGAACGT---------------------------------------------- 553 ************** consensus_7192#0 AANTTATAGCCACTCGTAAATCAGATGATAATGCATATGAACCCCAACCCCAGTATGTTT 659 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 NATTAAGAAACGGTGATGAATAATACCAGCTATTGGGTGATCATGAAGTACAATAC 715 consensus_7192#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||